Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00955 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGCGACACAGCGTACCGACGAACCGGTCGATCAACCAGCTTCAATCAGCAGCGAGGTAATACCGGCGGTGGTTCATACGTTAAGGCCGGCACCGCCGTCCCTTCTCCCTCACTCTCTTCTTCTCGAAGTTTTAACAAGAAGTCTAATAATCATGCACAAGGTGGAGGACCATCTAGGGTAGTAAACCCTACCCCAGCGAATGCTGCGAATTCAGCTCCGATTAATTATGCTTCTGCAGTCCGAGCAACCCCGAATGGTTCCCATATACAGCCACAATTTCATGGCGGTTCTGATGCATTGGCTACAAATGCAACTGCCAAGCCATCGGAATCATCAGCTGCACAGAAGAACACAAGAGTTGTTCCTAAAGCTCCTATTTCTCAACCTCCTCCCGTGAGTTCTGATGCTGCAGCTCCTACGACTCCTGCTAAGGGAGATGCATCCAAAGCATTCCCATTTCAATTTGGATCTGTTAGTCCTAGCGTTATGAATGTGGTGAAAATTCCTGCTCGTACAAGCTCGGCTCCTCCTAATATAGATGAGCAGAAACGTGATCAGATTCGTCATGATTCTTCAAGGCCCGCGCTTTCTTTGCCAATACCTCCTGTTCCAAAGCAGCTTCCAGCAAGTAAGGATACAATTGTGTCCGACCAATCTAAGGGTGGGGAAACTCATACTGGTACAAGGACAAAAAAGGATGCTCAAGTGTCACATTTACCCCCAGCAAGCTTGATGCACAAGCCTTCTGTTGTTCCTCTAACTGGGATTTCAATGCCAATGCCAACGCCATATCACCAGGCACAGGCACAGGCTCCTCTACACTTTGGTGTTCTTAATCCACAGATTCAACCTCATGGTATGTCAACGGCATCTCTTCAGGGGCCTTTACCAATTGGAAACGCTGCTCAAGTGCAACGCCAGGTATTCGTTCCAGGTCTTCCACCCCATCCTATGCATCCTCAAGGATTTATGCATCAAGGCCAAAATATAGGTTACAGTCCTCAAATGGGTCATCAATTGTCCCACCAGTTTGGCAACATGGGTATAGGCATCAACCCACAATGTTCCCCCCAGAAAGGAGGAAAATTTGCTGGACCTCGTAAAACTACTCCTGTGAAAATAACTCACCCTGATACCCATGAAGAGCTTAGACTTGATAAAAAGGAAGATGATAGTGGGTCATCTGGTGCTAGGTCTCATTCTAGCCTGCCTTCTCAATCTCCGCCTGTCCAATCATTTCCAGCTTCTCATCCTATCAGTTACTATCAATCCAATTCTCCCTTTTATCAAACTCCTAGTTCTCTTCCTTTATCAAGTAGCCAGATAACCCCCAACACTCAGCCACCAAAATTAAATTATGCAGCGAGCCATGGTCCACAAAATGTTGGTCTCACAAATTCATCGTCTCATAATTCCCTGCCTGTTAATAAAACTGCCACTTCTATTTCTGGCAATGTTGAACCACCTAAACGAGAATTTTCCCATGATGTGCCTAATGCAATCTCATCAGCTATGTCAGGAGCATCTTCTGTGTCTATAAAGCCAAATGTTGGGTCTGCCGTTGTGGTCTCATCATTTGCCAATTCAATTTCGGGTGCTCAAAAGGATGGATCTCTTAGTTCCTCCACAACATCTAGTGATGCTTGCTCTTTCGTGCCACCAAAAGGGTCTGAAACTTATTCCAAAATCTCTTCAGAACAATCTACTGCTGAGAAGCTTATATCATCTTCCTTGTTACCTTCTTCACCTGCTTTGAGTGAGGATTCTGTTCCAGTATTATCTAATAATGAAGGCAGAAAAAAGGAATCTCTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAGGACCATTGCAGCATCAGGTGGCTGTACAATCATCCGTGGCTAATGAACCTTCCCTAGCTGTTGATGGTGGCATCTCTGATTGTGTAGCTTCTGAAACTGCAGGAACTAAAACAATCCATTCTGCAGCAATTGCCAGTGAAGATTTATTAGCAGCAGCTTCAGCCCCAATATCAGCTACCAGTAAGAGCTTGCCTTCTACGACACTTGAAGAAACAACCAGTGGTTCTACACAGGTCTCTTCTTGTGCTTCAGCTGAAGGACTTGTTATTCAAGCCGCGGATAGTTTGGACAATCATAAGAGTGCTGAGGTAGATAAATTATCCCAAGAGGATAAACTGTTAAGACAGAATGATAGTGTACTTAGTAATGAAGCTATTTCTTCAACTTCTGGCTCATCAGATCAGCAATCTTCTGGTCTTTTAGAAACAACTTCAAAACATTGCAAGGATAATTCAGAGGATACTATTGCTGGCAGTGGCTCGGTGTCTCTTCCAGCAGCACCGGGTACTATGGACGGACCAATTTTAGAGCCAAGTAAGGTAAAAGGTGCATCAAAGGGGAAAAAGAAACGAAAGGAATTTCTTCAGAAAGCAGATGCTTCTGGGTCAACAGCTGATCTGTATAACGCATATAAGGGACCTGAGGAAAAGAAAGAAGCTGTTGCAAGTTCAGAGAGCACTGCCAATGTTTCTACTTCTGGAACTTTGAAGAAGTTGCCTGTGGATACTGCTCAGACAGATGCAGTTGCAAATGAACTTGAGGACTGGGAGGATGCTGCTGACATGTCCACTCCAAAACTTGATGTATCAGATAAAACTCAACAGGTTAGTGACAGAAGTGCAGTTACTGACAAAAAGTACTCTCGAGATTTCCTTTTGAAATTTGCAGAGAATTGCACTGGTCTTCCTGAAGGGTTTGAAATCACAGCAGACTTAGCTGAGGCTTTGATGACTTTTAATGTTAGTTCCCATGTTATTGTGCACGACTCACATCCTTCTCCTGGAAGAAAGACAAATAGGTCAGGTGGGATGTCTTGGATGGATCGTCGTGGGAGTGGTGTTATTGAGTATGATAAATGGAATAAAGTGCCTGGTGCTTTTCATTCTGGCATGCGTTTGGATGGTAGTGGAGGTAATACAGAATTTAGACCTGGTCAAGGAAGCAATTTTGGTGTTTTAAGGAATCCACGCCCACAGGGAGCTATGCAACATGGTGGAGGGATTCTTTCTGGGTCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAAGAATAGCCCTGATGGTGAAAGGTGGCAGCGTGCTGCTAACTTCCAGCAGAGGGGTTTAATTCCATCTCCTTCTTCTCAATCTCCTTTGCAGACGATGCACAAAGCTGAGAAGAAGTATGAGGTGGGTAAGGTGACAGATGAGGAACAGGCAAAACAGAGGCAGTTGAAAGGTATACTGAACAAGTTAACTCCCCAGAATTTTGAGAAGCTTTTTGAGCAGGTTAAAGCAGTTAATATTGATAATGTAGTTACTCTCACTGGTGTCATATCACAAATCTTTGAGAAGGCCTTGATGGAACCCACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCAGCTGCGTTGCCTGATCTCTGTCAAGACAATGAAAAGATAACATTTAAGAGATTATTGTTAAATAAGTGCCAGGAAGAATTTGAGAGGGGTGAGAGAGAGCAAGAAGAAGCTGATAAAGCTGATGAGGGTGAGGTTAAACAGTCTGATGAGGAAAGAGAAGCGAAACGATTCAAGGCTAGAAGACGAATGTTGGGTAATATCAGGTTAATTGGAGAACTATATAAGAAGAGAATGCTGACAGAGAGGATAATGCACGAGTGCATAAAAAAGTTACTGGGTCAGTGTCAGACTCCAGATGAAGAAGATATTGAAGCTTTGTGCAAACTGATGAGTACTATTGGGGAGATGATTGACCACCCCAAAGCCAAGGAGCACATGGATGTATATTTTGAAAGAATTAAATTATTGTCAAACAACATGAATTTATCTTCTAGGGTGAGGTTCATGTTAAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAAGGAGAAAAGTTGAAGGCCCAAAGAAGATTGAAGAGGTGCACCGGGATGCTTCCCAAGAGAGGCAATCCCAAGCTGGTAGGCTGGGTTGTGGTATGGGTATTAGCACACAAAGATGGACCCCTATGGATTTTGGTTCAAGAGGCTCATCTATCTTATCCCCTCCTAATGCTCAGATGGGTGGATTGCCTAATCAAATGCGTGGGTATGGTTCTCAGGATGTTCGTGGATATGAAAGGCAATCTTATGAGGCTAGGCCACTATCTATTCCCTTGCTGCAAAGATCTACAGGTGATGAGTTAATAACCTTGGGACCCCAAGGTGGTCTTGCTAGAGGAATGGCCAGTAGAGGTCCACCTGCTGCTTCCAGTTTTGGCGGTCCTAATGGTTACAGTAATTTATCGGTGCGCCCTTCATACAGCCCTAGGGAGGACCTCACTCCAAGATATGTTCCAGATAGATTTTCTGGTCAGACTACTTATGATCAATCAAGTGTTCTAGAGCAGAATATGAATTATGGTAACAGGGATTTGAGAAATGTAGATAATAGGATTCTTGATAGACCTGTTGTAAACCCACCTCCTGCCCGAGCACAAGAGACATCAGACTTCCAGTATACGTCTTCAGAAAATAGTTTGTCAGAAGAGCGACTACAAAACATGGCAATGGCAGCAATTAGAGAATATTATAGTGCTAGAGATGTAAACGAAGTTGTTTTGTGTGTCAAAGATCTGAACTCTCCAAATTTTCATCCTTCCATGGTTTCTGTTTGGGTCACAGACTCATTTGAGAGGAAGGACACAGAAAGAGATCTTTTGGCCAAACTGCTGATCGATCTTGTAAAATCTCATGGTGGCACCTTAAGTCAAGCCCAGCTCATTGGAGGGTTTGAATCTGTTTTAAATACTTTGGAAGATGGGGTTACAGATGCCCCAAAAGCACCAGAGTTTCTTGGCCGCATTTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGGAGGCGATTGGGCGGTTAATACACAATGGTGGAGAAAGCCTCTTACAAATTGGACTTGCAGCTGATGTTCTTGGAAGCACCTTGGAAGTGATACAAACTGAGAAGGGCGATGCTTTTTTGACCGAGATCCAGAGAAGCTCCAACTTGCAATTACAGACTTTCCGGCCACCAGCACCGATTAAATCACGAAAACTAGAAAAATTCATTTAG 5187 0.4359 MSFNQSKSDKSDTAYRRTGRSTSFNQQRGNTGGGSYVKAGTAVPSPSLSSSRSFNKKSNNHAQGGGPSRVVNPTPANAANSAPINYASAVRATPNGSHIQPQFHGGSDALATNATAKPSESSAAQKNTRVVPKAPISQPPPVSSDAAAPTTPAKGDASKAFPFQFGSVSPSVMNVVKIPARTSSAPPNIDEQKRDQIRHDSSRPALSLPIPPVPKQLPASKDTIVSDQSKGGETHTGTRTKKDAQVSHLPPASLMHKPSVVPLTGISMPMPTPYHQAQAQAPLHFGVLNPQIQPHGMSTASLQGPLPIGNAAQVQRQVFVPGLPPHPMHPQGFMHQGQNIGYSPQMGHQLSHQFGNMGIGINPQCSPQKGGKFAGPRKTTPVKITHPDTHEELRLDKKEDDSGSSGARSHSSLPSQSPPVQSFPASHPISYYQSNSPFYQTPSSLPLSSSQITPNTQPPKLNYAASHGPQNVGLTNSSSHNSLPVNKTATSISGNVEPPKREFSHDVPNAISSAMSGASSVSIKPNVGSAVVVSSFANSISGAQKDGSLSSSTTSSDACSFVPPKGSETYSKISSEQSTAEKLISSSLLPSSPALSEDSVPVLSNNEGRKKESLSRSNSLKDNQKKGPLQHQVAVQSSVANEPSLAVDGGISDCVASETAGTKTIHSAAIASEDLLAAASAPISATSKSLPSTTLEETTSGSTQVSSCASAEGLVIQAADSLDNHKSAEVDKLSQEDKLLRQNDSVLSNEAISSTSGSSDQQSSGLLETTSKHCKDNSEDTIAGSGSVSLPAAPGTMDGPILEPSKVKGASKGKKKRKEFLQKADASGSTADLYNAYKGPEEKKEAVASSESTANVSTSGTLKKLPVDTAQTDAVANELEDWEDAADMSTPKLDVSDKTQQVSDRSAVTDKKYSRDFLLKFAENCTGLPEGFEITADLAEALMTFNVSSHVIVHDSHPSPGRKTNRSGGMSWMDRRGSGVIEYDKWNKVPGAFHSGMRLDGSGGNTEFRPGQGSNFGVLRNPRPQGAMQHGGGILSGSMQSMVNQGGMQKNSPDGERWQRAANFQQRGLIPSPSSQSPLQTMHKAEKKYEVGKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLCQDNEKITFKRLLLNKCQEEFERGEREQEEADKADEGEVKQSDEEREAKRFKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQCQTPDEEDIEALCKLMSTIGEMIDHPKAKEHMDVYFERIKLLSNNMNLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRLGCGMGISTQRWTPMDFGSRGSSILSPPNAQMGGLPNQMRGYGSQDVRGYERQSYEARPLSIPLLQRSTGDELITLGPQGGLARGMASRGPPAASSFGGPNGYSNLSVRPSYSPREDLTPRYVPDRFSGQTTYDQSSVLEQNMNYGNRDLRNVDNRILDRPVVNPPPARAQETSDFQYTSSENSLSEERLQNMAMAAIREYYSARDVNEVVLCVKDLNSPNFHPSMVSVWVTDSFERKDTERDLLAKLLIDLVKSHGGTLSQAQLIGGFESVLNTLEDGVTDAPKAPEFLGRIFAKAITEHVVSLEAIGRLIHNGGESLLQIGLAADVLGSTLEVIQTEKGDAFLTEIQRSSNLQLQTFRPPAPIKSRKLEKFI 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00955 1728 SUPERFAMILY ARM repeat 1096 1326 IPR016024 -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 95 132 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 442 497 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 1194 1217 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 1329 1358 - -
Trre13g00955 1728 FunFam Eukaryotic translation initiation factor 4G 1102 1337 - -
Trre13g00955 1728 Gene3D - 1535 1728 - -
Trre13g00955 1728 SMART if4_15 1102 1324 IPR003890 GO:0003723|GO:0005515
Trre13g00955 1728 MobiDBLite consensus disorder prediction 95 156 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 442 506 - -
Trre13g00955 1728 SUPERFAMILY ARM repeat 1537 1723 IPR016024 -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 686 707 - -
Trre13g00955 1728 Pfam MIF4G domain 1102 1323 IPR003890 GO:0003723|GO:0005515
Trre13g00955 1728 ProSiteProfiles MI domain profile. 1543 1667 IPR003891 -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 17 34 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 1 82 - -
Trre13g00955 1728 Pfam MA3 domain 1550 1656 IPR003891 -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 383 405 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 42 67 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 542 631 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 1437 1456 - -
Trre13g00955 1728 FunFam Eukaryotic translation initiation factor 4G 1537 1727 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 748 825 - -
Trre13g00955 1728 Gene3D - 1102 1337 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 748 771 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 363 428 - -
Trre13g00955 1728 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 360 1728 IPR045208 GO:0003743
Trre13g00955 1728 MobiDBLite consensus disorder prediction 406 428 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 182 256 - -
Trre13g00955 1728 Coils Coil 1184 1204 - -
Trre13g00955 1728 SMART ma3_7 1544 1658 IPR003891 -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 1329 1348 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 542 608 - -
Trre13g00955 1728 MobiDBLite consensus disorder prediction 840 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00955 Trre-Chr13 7811145 7819132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00955 1 1727 Eukaryotic Initiation Factors Gene Family AT3G60240 45.988 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00955 K03260 - gmx:100798562 1895.94