Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00951 ATGAGTTCCACAAAAGTTATGTCGTTTGAGCTGAATGGAGTGCAAATCAAAACCACTGTGACCAATCACATAAAAGTGCTCGATGAACACATATCGTCTTTCTTACACCCTACCAACAATTACGGAACCAAGGTTATCGGTTTTGATACCGAGTGGCGTCCGCCTGCAATGAAGGAGCCTGCAACCTTTCAACTTTGTGATGGTAATTCATGTCTTATTTTCCACTTACATCCTCGGAATCCGGTTCCCCTTTCACTACGTAATTTTCTTCGTCAACCAAATTATACCTTTGTTGGTTTCGGTATTAGAGACGATTTTGATTACTTGAAGAAACTTAGTGGGATTGGATGCAAAAATGCTGTAGAACTTGGAACCTTGGCTGCTACTCTGATGGACAACCATTATTTAAGTTTTTGCGGCGTTGATGAACTTGCATTTGTTGTCAATAAACTTGATCTTCGCAAGTACAGGCCTTTAAACTTGGATTTAATTAATTGGGGTGATTATCCGGTTAGCGAAGAACTCGCTAAGCTTGCTACTGTTAATGTTTACTCTTATCACAAGATTGGAAGTGCATTGTTTGAAAGGTATAGACCTCAATCACATCCATCTAGTGATGTTTACTCTTTGGTGCCACCAAATTCTTTGAAGGAGAATCAGAAGAAACTGGAGAAGAAAGGTCAATTGCAACATCAGGACCTCACACCAAGATATGTTCCAAATAGATTTGCTAGTCCAACTACTTATGATCAATCAAGTGCTCCTGAGCAAAGTGTGAATTACAGTAACAGGGATTTGGGAAATGCAGATAAGTTTCTTGATAGACCTGTTGTACATCCACCTCCTGCCCGAGCACAAGAGACAGCACTCTCCCAGAATACCTCTTCAGAAAAGGGTTTGTCAGATGCGAAACTACAGAACATGTCCATGGCAGCAATTAAAGAATACTATAGTGCCAGAGATGTGAACGAAGTTGTTTTGTGCGTCAAAGATCTGAACTCTCCGAGCTTTCATCCTTCCATGGTTTCTCTTTGGGTGTCTGATTCATTTGAGAGAAAGGATACAGAGAGAGATCTTTTGGCCAAACTGTTGATCGACCTTGTGAAATCTCATGGCGGTACCTTAAGTCAAGCCCAGCTCTTCAAAGGGTTTGAATTTGTTCTAAGTACTTTGGAAGATGTGGTTACGGATGCCCCAAGAGCACCGGAGTATCTTGGTCGCATTTTTGCCAAAGCTATAACAGAGCATGTAGCCTCTTTGAAAGAGATTGGGCAGTTAATACGTGACGGCGGAGAGGAATCAAGTAGCCGCTTACAAATTGGACTTTCAGCTGACATTCTCGGAAGTACCTTGGAAGTGATACAAACAGAGAAGGGCGATGCATTCTTGAATGAGATCCAGACAAGCTCCAACTTGCAATTGCAGACCTTCCGTCCGCCAGAACCTATTAAATCCCGGAAACTAGAAAAATTCCTTTAG 1479 0.4178 MSSTKVMSFELNGVQIKTTVTNHIKVLDEHISSFLHPTNNYGTKVIGFDTEWRPPAMKEPATFQLCDGNSCLIFHLHPRNPVPLSLRNFLRQPNYTFVGFGIRDDFDYLKKLSGIGCKNAVELGTLAATLMDNHYLSFCGVDELAFVVNKLDLRKYRPLNLDLINWGDYPVSEELAKLATVNVYSYHKIGSALFERYRPQSHPSSDVYSLVPPNSLKENQKKLEKKGQLQHQDLTPRYVPNRFASPTTYDQSSAPEQSVNYSNRDLGNADKFLDRPVVHPPPARAQETALSQNTSSEKGLSDAKLQNMSMAAIKEYYSARDVNEVVLCVKDLNSPSFHPSMVSLWVSDSFERKDTERDLLAKLLIDLVKSHGGTLSQAQLFKGFEFVLSTLEDVVTDAPRAPEYLGRIFAKAITEHVASLKEIGQLIRDGGEESSSRLQIGLSADILGSTLEVIQTEKGDAFLNEIQTSSNLQLQTFRPPEPIKSRKLEKFL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00951 492 Gene3D - 296 492 - -
Trre13g00951 492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 207 492 IPR045208 GO:0003743
Trre13g00951 492 SMART ma3_7 305 419 IPR003891 -
Trre13g00951 492 MobiDBLite consensus disorder prediction 221 301 - -
Trre13g00951 492 SUPERFAMILY ARM repeat 298 487 IPR016024 -
Trre13g00951 492 FunFam Eukaryotic translation initiation factor 4G 298 491 - -
Trre13g00951 492 ProSiteProfiles MI domain profile. 304 428 IPR003891 -
Trre13g00951 492 MobiDBLite consensus disorder prediction 241 265 - -
Trre13g00951 492 MobiDBLite consensus disorder prediction 286 301 - -
Trre13g00951 492 SUPERFAMILY Ribonuclease H-like 38 193 IPR012337 -
Trre13g00951 492 Pfam MA3 domain 311 415 IPR003891 -
Trre13g00951 492 Gene3D - 1 193 IPR036397 GO:0003676
Trre13g00951 492 Pfam 3'-5' exonuclease 43 148 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00951 Trre-Chr13 7792150 7795282 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00951 241 491 Eukaryotic Initiation Factors Gene Family AT3G60240 51.984 8.78e-78 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00951 K03260 - gmx:100796636 363.229