Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00946 ATGGCTGGTGTTTCTAGCCGTACTCGTAGCAAGAAAATTTCAATGGCGGGTGTTTCTAGCCGAACTCGGAGCAAGAAAGTTCCTTTGTTCGGTTGTCTTTCACTTAATAGTTCATCGAAGCGGAAAAAGAATGTTGAAGTTGATATGAGTTTGGATTCTGTTTCATCTGGGTCTAAAAGAAAGAGGGTCAAAGATGAACCTTTTGTGATGATGGATGGTGTTTCTAGCCGAACTCGGAGCAAGAAAGTTCCTTTGTTCGGTTGTCTTTCATTTGATGGTTTATCTTCTAAGAGGAGAAAGGGTGACGAAGGTGGACTGGTTCCGGGATCTGTTTCTGGGTCTGGAAAAATGAGGGTAAAAGGAGAAGTTTTAGTGGTTCCTGAGAATGATATGATTATTTCCATCCATGATGATGTTGATGAAGAACGGTTGGTTCAATGTGGTGAGAAATTGTTTGAGGGTGGTGTTGATGTTAAAAAGGATATGAAAAGTGATGAAAATGGAGGAAGTGGTGATATTGCTGATAAAGATAAAAACTTTGTTGATGAAAAGTTTTTAGATAAATCTGACGAAAGTGATGATGATGTGGAAGGGTCAGAGCAAGATGATGAGAAGATGTTTGAGGGCAGCGTTGATGTTGAAAAGGAAGTTAAAATTGATGAAAGTGGAGGAATTTTTGAGATTGCTGATAAAGATGGAAACTTTGTTGATGATGGTGGTTTTGAACCTAAAAACCCAATTACAGTAAGTGAGGCTGGTGTTTCTAGCCGAACTCGGAGCAAAAATGTTCCATTGTTTGGTTTTCTTTCACTTGATGGCTTATCTTCAAAGAGGAGAAGGAATGATAAAGATGAAATTGCTTTGGTCTCTGTTTCTGAGTCTACAAAAATGAGGGTAAAGGGAGACGTTTTGGTGGTTCCTGAGAATGATAAGGTTATTTCCATCCATGATGATGATGTTGATGATGAAAATGAAGAAAGGTTGGAGCAATGTGGTAAGATGTTTGAGGGTGATGTTGATGTTATAAAGGAAGTGAAATGTGATGAAATTGGAGGAAGTGGTGAAATTTCTAATAAAGATGAAAACTTTGTTGATGTTAAGTTTTCAGATGAATCTGGTGAAAGTGATGATGAAGAACTCTCTGTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTACGATGATGAAGAACTTTCTGTTGATGAAGATGAGAGTGAGGAAAATGAGACCAGTGATGAAGATTTTATAGTTGACGAGGATGATGATGATGATGATGATGGTAAGGATGATGATGGTGATGATGATTTGGAGGAGGAGGAGGAGGAGAAGAAGGGCCGCAATGTTAATGATGGTAAGGATGAGGGTGTGGAAAAGTTGTGGCAAGAATGTGCCATGATGGAGAAGCTGTTGAAAGATAAAAATAGTGAAATTTCTGAGAAGAATAATGAGGTGGTAAAGATTGAGAGTAGTCCTTTTTCTGTTACAGATCATTCTAGTGTACCAGCATCTGTTACCTTTGAGAAAAAGGGTTATTTTGACCCAATGAAGGGTTCTTCTTCTTCTTCCAACCTGAATAAAGTATCCGAGAAAAGCAAATCAAAGAGTGTAGGAATAATAAACATGCAAAATGTCAGTGGTGAAGATGATGTTCAAATTATTGGTTCTTCTAAGCTTCACAAGGGTGAGACAAATAATGGTGATGATGATGATGAGGAGGAGGAGAAGGAGAAGGGTTGGAGAAAATGCGATGTGGTGGAGGAGGACGAAGAGGGGGTTTTGAAAAAGTTGTGGCAAGAATGTGCCATGATGGAGAAGGAGTTAAAGATTGATCCAATGAAGGGTTCTTCTTTTTCTTCTTCCAACATGAATAAAACATCCAAGAAGTGCGAATCAAAGAGTGCTGACTTAAACATGCAAAATGTCTGTGATGATTATGATGAAGGAAAACAACATGGCAAAGGTTTAGCTGTTCGAGGAGTTTCTTTGTTTCAAGCAAAACAAGAAAATATGTGGTTTGCAAATACACAAAAAATGCCGGAGAACAAAGTAATGGATTATAAAGGCAGAGTTAACATCTGGAGCGGTGAGAAGAAGACAACCATGGAAAACAATGGTTTAAATCGAAGGGTAAATAGCACACTGTTTATGCGGAAGGAGTTGCATTTAGCTAAACTCCTTGCTGACTGCTATTGGGGTGACAAGAATGATACCATGAAGAATGATTCAATTCTATTGGAGATCAAGGATATCACTGTTGATCAGAGAGATACACGGCTACCACCGGTTTGTGTAGAGACACCATCATTGATATGGAGCCTAAAAAAGGTTGAAAAAGTGGAAAAGACTAAAGAAGAGGAGGAGCAGGAAATGTTATGGGATCAAGTGGATACATCTCTTAGAGAATTAGAAGCTGAATCCAAGATTGGAAGTTTAGGGACAAATGAAGTTAAACAAGACAACATGGGAAATCTCTGTGAACATGATACTCGTCTCGACGACGAGATCGGTGTATATTGCAGATGGTGTGGTGTGGTTTTCACTGAGATCAAATATATCTCACCACTGGTGGTGGATCGATTTCCCTGTGAAGGTTCTGGAAAAAGAACTTCATTTGATGATCCAGTTAACGCGTCACTCTTTGATGGATCTCAATTCAATGTTTCTGATGAAGAATCAGTGCCGAATTTCTCTTATAATGAAGGCACAGTTTGGAACCTAATTCCTGGTGTGAAACAAACTTTATATCCTCACCAACAAGAAGGCTTTGAGTTCATTTGGAAAAACCTAGCCGGAAACATTCATCTGCACAAGTTGAAGAACGCCAATCCTCGCAGAGAGGGTGGCTGCATTATCTCGCATGCTCCTGGAACTGGAAAGACAAGGTTGACAATAATGTTTCTCATGGCATATATGAAAGTGTTCCCGAAATGCTTTCCGGTTATTGTTGCTCCTGCAGGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATCTAAACAGTTCTGAGTTATCTGGGAAAGAGCACGATGATGCTGTTAATTGGTCTAATACACGGCAAAGTAAGGAAGAAATAAGGATGGTAAAACTGATTTCATGGTTCAAAGAAAAGAGCATTCTGGGAATAAGTTACACTTTGTACAAGAACCTAGCCGGCGGAGAATTCAAAGATAAGAAAAAAAAGAAAAAACAACATGCTGAAAAAATGAAAGAGGAAAAACATGCAGATGTGGAGAAGAGAAAAGAAAATGATGTTATGCGAAAGGTTCTACTCGAAGTTCCTCGTTTGTTAATTCTAGATGAAGGACATACACCGAGAAATCGAAGAAGTAATATTTGGAAGGTGTTATCAGAAGTTCAAGCGCGTAAGCGAATTATTCTTTCAGGAACTCCTTTTCAAAATAACTTGTTGGAACTTTACAACACATTTAGCTTAGTGAAGCCTTCTTTTCCTAACACGATACCTCACGAGCTGAAAAAATTTTGCGAACGCAAAAGTGCATCGAAAGAATGGAGTTGGGAAGTGGATTCTGGCAATAGTACACGAATGAGCAATCCTTCTGATGTTAAGATCAAGCAGTTGAAAATGCTTATGGATCCGTTTGTTCATGTGCATAAAGGAGCAATCCTTCAAAAGAAGCTTCCCGGGTTAAGAGATTGTGTACTGATTTTGAAGCCGGACAGTTTCCAGAAGCAAATTATCGAGAGCATTCAAAGTGATCAGAATATATTGATCTTTGAACGTAAGCAGACAGTGGCATCTGTCCATCCATCTCTTTTCCTCCAATGCAAACTCTTGGAGGAAGAAGAATCCGTTGTTGACAAGGATCGGCTAGAAAAGCAATGGTTAAATCTATATGGCGGTGTCAAAACAAAGTTTTTGTTGGAGTTTGTTAAACTTTGTGATGCTTATAATGAGAAAGTTCTTGTCTTCAGCCAATTCCTCGATACTTTAAGCTTAATCGAAGACCAATTAAACTCGGTTTTTAAATGGACTCAGGGAAAGGAAATTCTGTACTTGGATGGAAATCTTGATCCAAACGAAAAGCAGTCCCGAATCCATAGCTTCAATGATGCAAGTTCCCAAGCAAAGATTATGCTTGCTTCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGAGCTTCAAGGGTTGTGCTGCTCGACGTTGTATGGAATCCATCCGTAGAACGGCAGGCTATCAGCAGAGCGTATCGGATCGGACAGAAGAGGGTTGTGTACACTTACCATCTTCTCACTCAAGGGACTGCTGAATATGCAAAATATTGTAAACAGGCCCAGAAGGACCGGTTATCTGAACTCGTGTTTACAGCCAAAAATGCAGATAATGATGATGAATCGAAGAGCTGCACTGTGAACATTGAAGATAGAATTCTTGATCAAATGATGCGGCACGAAAAGCTCAAAGACATGTTTGTTAAGTGTGTGGTACAGCCAAAGGATCAAGATTTGGTCGATAGTTTTGGCTATTGA 4533 0.3927 MAGVSSRTRSKKISMAGVSSRTRSKKVPLFGCLSLNSSSKRKKNVEVDMSLDSVSSGSKRKRVKDEPFVMMDGVSSRTRSKKVPLFGCLSFDGLSSKRRKGDEGGLVPGSVSGSGKMRVKGEVLVVPENDMIISIHDDVDEERLVQCGEKLFEGGVDVKKDMKSDENGGSGDIADKDKNFVDEKFLDKSDESDDDVEGSEQDDEKMFEGSVDVEKEVKIDESGGIFEIADKDGNFVDDGGFEPKNPITVSEAGVSSRTRSKNVPLFGFLSLDGLSSKRRRNDKDEIALVSVSESTKMRVKGDVLVVPENDKVISIHDDDVDDENEERLEQCGKMFEGDVDVIKEVKCDEIGGSGEISNKDENFVDVKFSDESGESDDEELSVDDDDDDDDDDDDDDDYDDEELSVDEDESEENETSDEDFIVDEDDDDDDDGKDDDGDDDLEEEEEEKKGRNVNDGKDEGVEKLWQECAMMEKLLKDKNSEISEKNNEVVKIESSPFSVTDHSSVPASVTFEKKGYFDPMKGSSSSSNLNKVSEKSKSKSVGIINMQNVSGEDDVQIIGSSKLHKGETNNGDDDDEEEEKEKGWRKCDVVEEDEEGVLKKLWQECAMMEKELKIDPMKGSSFSSSNMNKTSKKCESKSADLNMQNVCDDYDEGKQHGKGLAVRGVSLFQAKQENMWFANTQKMPENKVMDYKGRVNIWSGEKKTTMENNGLNRRVNSTLFMRKELHLAKLLADCYWGDKNDTMKNDSILLEIKDITVDQRDTRLPPVCVETPSLIWSLKKVEKVEKTKEEEEQEMLWDQVDTSLRELEAESKIGSLGTNEVKQDNMGNLCEHDTRLDDEIGVYCRWCGVVFTEIKYISPLVVDRFPCEGSGKRTSFDDPVNASLFDGSQFNVSDEESVPNFSYNEGTVWNLIPGVKQTLYPHQQEGFEFIWKNLAGNIHLHKLKNANPRREGGCIISHAPGTGKTRLTIMFLMAYMKVFPKCFPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNSSELSGKEHDDAVNWSNTRQSKEEIRMVKLISWFKEKSILGISYTLYKNLAGGEFKDKKKKKKQHAEKMKEEKHADVEKRKENDVMRKVLLEVPRLLILDEGHTPRNRRSNIWKVLSEVQARKRIILSGTPFQNNLLELYNTFSLVKPSFPNTIPHELKKFCERKSASKEWSWEVDSGNSTRMSNPSDVKIKQLKMLMDPFVHVHKGAILQKKLPGLRDCVLILKPDSFQKQIIESIQSDQNILIFERKQTVASVHPSLFLQCKLLEEEESVVDKDRLEKQWLNLYGGVKTKFLLEFVKLCDAYNEKVLVFSQFLDTLSLIEDQLNSVFKWTQGKEILYLDGNLDPNEKQSRIHSFNDASSQAKIMLASTRACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLTQGTAEYAKYCKQAQKDRLSELVFTAKNADNDDESKSCTVNIEDRILDQMMRHEKLKDMFVKCVVQPKDQDLVDSFGY 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00946 1510 MobiDBLite consensus disorder prediction 185 213 - -
Trre13g00946 1510 SMART helicmild6 1332 1421 IPR001650 -
Trre13g00946 1510 Gene3D - 1224 1505 IPR027417 -
Trre13g00946 1510 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 535 1503 IPR044567 GO:0080188
Trre13g00946 1510 Pfam SNF2-related domain 937 1264 IPR000330 GO:0005524|GO:0140658
Trre13g00946 1510 Gene3D - 891 1202 IPR038718 -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 1 24 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 560 585 - -
Trre13g00946 1510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1306 1462 IPR001650 -
Trre13g00946 1510 Pfam Helicase conserved C-terminal domain 1314 1421 IPR001650 -
Trre13g00946 1510 Coils Coil 468 495 - -
Trre13g00946 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1108 1466 IPR027417 -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 371 445 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 516 548 - -
Trre13g00946 1510 CDD SF2_C_SNF 1303 1432 - -
Trre13g00946 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 908 1175 IPR027417 -
Trre13g00946 1510 SMART ultradead3 915 1170 IPR014001 -
Trre13g00946 1510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 945 1162 IPR014001 -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 351 370 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 351 463 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 1071 1092 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 188 202 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 446 463 - -
Trre13g00946 1510 MobiDBLite consensus disorder prediction 520 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00946 Trre-Chr13 7718764 7724145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00946 1319 1451 RAD5 or RAD16-like Gene Family AT5G43530 39.098 1.59e-17 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g00946 SNF2_N 6.8e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00946 K10875 - gmx:100806733 864.374