Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00945 ATGGCTGGTGGTGTTTCAAGTAGAACACGTAGCAAAAAGGTTCCATTGTTTCAAAGGCCTTTACCTGATTCTTCATCTTCAAAGAGAAGAAAGAAGAATGATGAAGATATCAGTTTAGAATCTTCTTCTGGGTCAAACAGAAGAAGATTAAAAGATGAAGCTTTTTTGGTTCCGGAGAACGTTGAAGTTATTTCTATTGATGATGGAGATGAAGATGAAGTTAAATTTGATGAAAGTGGTTGGGTTAGTGAAAACCCAATCACAATATGCTCTGATGAAGAAAAAGATGATGTGATATTTGGTGAAGATGAAAACGTGGTTTTATTTGATGATTCTGATGATGATGAAGATGATGATGATGATGATGATGGTGATGATGATGAGAGTGAAGAAGATGATACAAGTGACGAAGATTTCAAAGCGGATGAACTGAATGAGGTTTCCGATGATGATGATGATAGTTATGAAGACGAAGAGAAGAAGAAAAAGATAATGAGAACAAATTTTGATGTGGTGGAGGAGCTCGAGAGAGAGGTGATGGAAGAAGAAAGTCAAATTTCTGTAACAAATTCTACTACCATCATTGAGAAGAAGAAGAAGGGTTCTTTTGATTCAATGAAAGGTTGTTCTTCTTCATCTTCAAACCAAGAAGCATCAAAGAAACAGAAAGCGAAAAGTGTGGAAAAAAATGTCTCTGAGGTTTCTGATTGTCATGAAGGAAACAAACAATATGGCAATAGAAGTTGGAATAATTCAGACAAAGAGAAAAAAGTGGAGAGCAATGCTTTCAATCAGAGGGGACAGAGGGCCAAAAACGCGTATTTCACAAAGAAGGATTTGAGTTTAGTGAAGCTTCTTTCCGAATGCTATTCTGACAAGAGGAATAGCACGAAGAATGATCCGGTTCTGTTGGAGGGGTATAGCTATAATGATGACGATGACGATGATGATGATGTTAATCAGTGTGATACACGGAAACCGCCGGTTTGTGTTGAGACACCTCTGAGATGGAGCCTAAAAAGGGTTCAAGAAGTGGAATTGACTGAAGAGGAGGAGGAGGAACGGAGGAAGAATGAAGCGTTAAAGCCGATATGGGATGAAATGGAAATGTTACTTAATGAATCAGAAGCTGAATCCAAGATTGGAAATTTAGGTATAAATGAAGCTACAGAAGAAAACAATGGAAGTCCATCATCTCATTGTGAGCATAACCTTATTTACGACGAAGAGATTGGTGATTATTGCAAATCGTGTGGTACGGTTATTACTGAGAGCAAATATAAGACACAACTAGTGAGGGATAGTTTTCCCAACGAAGGATACGAAAAAAGAGCTTCATCGGAGGATTCAGGAAATGCCTCGCTCATTGGTTGCTCTCAGTCTCAGTTCAATGCTTCTGATGGTGATTTAGATGCTACTTTCTGTCATAAAAAAGGAACAGTTTGGGACCTAATTCCTGAAGTGAAAGAAACATTGTATCCTCATCAACAGGAAGGTTTTGAAGTCATTTGGAAAAACTTGGCAGGAAGCATCAAACTTCGAAAGTTGAAGAACGCGGATCCTGACAGAGAGGGTGGCTGCATTATTTCACATGCTCCTGGAACTGGAAAAACTAGGTTAACTATTGTGTTCCTCATGGCTTATTTGAAAGTATTCCCTAAATGCTTTCCGGTTATCATTGCTCCTTCGGGTTTGTTACATACTTGGGAAGACGAGTTCAAAAAATGGAACATCGGAGTTCCATTTCACAATTTAAACAATGAGGAGTTATCTGGTAAAGAGCATGATGATGCTGTTAATGAGCTTAATTGGTCTAATGCACAGCATAGTAAGGAAGATACGCGGATGGTGAAACTGATATCATGGTACAAAGAAACGAGCATTCTTGGAATCAGTTACACTTTGTATAAGGAACTTGCTGGTGCAGTGCAATCTGAAAATAAGAGAATGAAAAACCAAGCAAGTGCGCAGAAAAGAAAAGAAATGGGAAAATCTCTGCGTGAAGTTCCTGGTTTGTTGGTGCTAGATGAAGGACACACACCGAGAAATAGAAGCAGTGATATCTGGAAGGTGTTTTCGGAAATTTCAACAAAGAAGCGAATTATACTGTCAGGAACTCCTTTCCAGAACAACTGCTTGGAACTTTATAACACCCTCAGCCTTGTGAAGCCTTCTTTTCCGAACATGTTACCGCAGGAGCTGAAAAAGTTTTGCCAGAAGCAAGAACATAAGAAGGCATCATCGGAGGAATGGAGTTGGGAACCGGATTCTGTCAGTAGTAAAACATCTGATGATAATATTCAGCAGTTGAAGCTGTTTATGGATCCGATTGTGCACGTTCACAAAGGCGATATCCTTCAAAAGAAGCTTCCGGGGCTAAAAAACTGCGTGCTGCGTCTGAAGCCTGACAGTTTCCATCAGCAAATTCTCGAGAGTTTTGATAGTTCTCAGAACGCATTGATATTTGAGAATAATCAAACAATTGTGTCAGTCCATCCATCTCTTTTCCTTGAATGCACTCTCTCGGAACAAGAAGAATCCTCTGTCGACAAGGACCGGTTAGAGAAGCTTAGACTGAATCATAAAGCAGGCGTCAAAACAAGGTTTCTGGTCGAGTTTGTTAGTCTTTGTGCTGCTGCCAATGAAAAGGTTCTCGTGTTCAGCCAGTACCTCCGTCCTTTACACTTGATCATTGAGCAATTAAAGTCGGCATTAAAATGGACCAAGGATGAGGAGATTCTGTACATGGATGGACAGACTAAGGACAGGCAATCCTTAATCCGTAGATTCAATGATGCAAACAGCCATGCGAAGATTCTCCTTGCATCAACAAGAGCTTGTTCCGAGGGAATCAGCTTAGTCGGAGCTTCGAGGGTTGTACTACTAGATGTCGAATGGAATCCGGCCGTTGAAAAGCAGGCTATAAGCAGGGCTTATAGAATTGGGCAGCAGAAGGTTGTCTACACATACCACCTTCTCACTCAAGGTACAAGAGAGTGCGACAAATACTGTAAACAGATTGAAAAGTTCAGACTGTCTGAACTTATTTTTTCGGCTAAAAATGCCGACATCAATGACGAGTCAAAAATCCGTGCAGCGAACATTGAAGATAGAATTCTGGAAAAGATGATTCGGCACGAAAATCTCAAAGACTTGTTTGATGATTGTGTGATACAAGGTTGA 3183 0.4009 MAGGVSSRTRSKKVPLFQRPLPDSSSSKRRKKNDEDISLESSSGSNRRRLKDEAFLVPENVEVISIDDGDEDEVKFDESGWVSENPITICSDEEKDDVIFGEDENVVLFDDSDDDEDDDDDDDGDDDESEEDDTSDEDFKADELNEVSDDDDDSYEDEEKKKKIMRTNFDVVEELEREVMEEESQISVTNSTTIIEKKKKGSFDSMKGCSSSSSNQEASKKQKAKSVEKNVSEVSDCHEGNKQYGNRSWNNSDKEKKVESNAFNQRGQRAKNAYFTKKDLSLVKLLSECYSDKRNSTKNDPVLLEGYSYNDDDDDDDDVNQCDTRKPPVCVETPLRWSLKRVQEVELTEEEEEERRKNEALKPIWDEMEMLLNESEAESKIGNLGINEATEENNGSPSSHCEHNLIYDEEIGDYCKSCGTVITESKYKTQLVRDSFPNEGYEKRASSEDSGNASLIGCSQSQFNASDGDLDATFCHKKGTVWDLIPEVKETLYPHQQEGFEVIWKNLAGSIKLRKLKNADPDREGGCIISHAPGTGKTRLTIVFLMAYLKVFPKCFPVIIAPSGLLHTWEDEFKKWNIGVPFHNLNNEELSGKEHDDAVNELNWSNAQHSKEDTRMVKLISWYKETSILGISYTLYKELAGAVQSENKRMKNQASAQKRKEMGKSLREVPGLLVLDEGHTPRNRSSDIWKVFSEISTKKRIILSGTPFQNNCLELYNTLSLVKPSFPNMLPQELKKFCQKQEHKKASSEEWSWEPDSVSSKTSDDNIQQLKLFMDPIVHVHKGDILQKKLPGLKNCVLRLKPDSFHQQILESFDSSQNALIFENNQTIVSVHPSLFLECTLSEQEESSVDKDRLEKLRLNHKAGVKTRFLVEFVSLCAAANEKVLVFSQYLRPLHLIIEQLKSALKWTKDEEILYMDGQTKDRQSLIRRFNDANSHAKILLASTRACSEGISLVGASRVVLLDVEWNPAVEKQAISRAYRIGQQKVVYTYHLLTQGTRECDKYCKQIEKFRLSELIFSAKNADINDESKIRAANIEDRILEKMIRHENLKDLFDDCVIQG 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00945 1060 Pfam Helicase conserved C-terminal domain 877 982 IPR001650 -
Trre13g00945 1060 MobiDBLite consensus disorder prediction 66 265 - -
Trre13g00945 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 742 IPR027417 -
Trre13g00945 1060 MobiDBLite consensus disorder prediction 1 54 - -
Trre13g00945 1060 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 869 1028 IPR001650 -
Trre13g00945 1060 Gene3D - 471 768 IPR038718 -
Trre13g00945 1060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 518 725 IPR014001 -
Trre13g00945 1060 MobiDBLite consensus disorder prediction 156 174 - -
Trre13g00945 1060 MobiDBLite consensus disorder prediction 24 54 - -
Trre13g00945 1060 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 24 1057 IPR044567 GO:0080188
Trre13g00945 1060 SMART ultradead3 488 735 IPR014001 -
Trre13g00945 1060 Coils Coil 172 192 - -
Trre13g00945 1060 CDD SF2_C_SNF 866 993 - -
Trre13g00945 1060 MobiDBLite consensus disorder prediction 96 155 - -
Trre13g00945 1060 MobiDBLite consensus disorder prediction 205 220 - -
Trre13g00945 1060 MobiDBLite consensus disorder prediction 221 236 - -
Trre13g00945 1060 Pfam SNF2-related domain 501 827 IPR000330 GO:0005524|GO:0140658
Trre13g00945 1060 Gene3D - 792 1056 IPR027417 -
Trre13g00945 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 1027 IPR027417 -
Trre13g00945 1060 SMART helicmild6 895 982 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00945 Trre-Chr13 7711216 7715186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00945 878 999 RAD5 or RAD16-like Gene Family AT5G43530 37.097 1.84e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g00945 SNF2_N 4.3e-22 CL0023