Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00944 ATGGTTGGTGTTTCAAGCAGAACTCGAAGCAAGAATATTCCTTTGTTTTCTAGTCTTTCACTTAACCGTTCATCTTCAAAGAGGAAAAAAAGTGATGAAGATGTTTTGAGTTTGGAATCTGTTTCTGGGTCTAAGAGAAGAAAGTTAAAAGATGAATCTTTTGTGCTTCCTAAGAAGGATGAGGTTATTTGTTTTTATGATGATGATTCTGATGAAGAAGGGTTGGAGCATTGTGATGTTAATGTTAAAAAGGAAGTGAAAAGTTATGAGAATGGTGATAAAAATGGAAACTTTGTTGATGATGAAAAGTGTGGTTGGGAACGGGAAAACCCGATTATAATGGATTCCGATGATGAAGACTTTGTTGGTTCTGAGGCTGATGATGAAGGAGATGATGTTAGAAAGGAAGTGAAAGTTGATGAAAGTGGTGGAAGTGGTAAATTTGTTGATAAAAATGAAGTTTTTATTGATGTGGATGATTCTGATGAGAGTGATGAAGATGGTGAGGATTCTGATGAAAGTGATGAAAATGAGAGTAGTGATGAGGATTTTAATGTTGATGAGGTGAAAGAGATTTCTGATCATGATGATGACAGTTCTTCTGATTCTTCTTTTGTCGATGATGTTGATGATAAGGAGGAGGAGGAGGAAGAAGAGAAGAAGAAAAAGGATTGGAGAAAACACTTGAATGGAAAATACTTCAATGTGGTGGAGAAGCTGGCTAGAGAGGTGAATGATGAGAAAAGTGAGGAGGAGGAGGAGGAAGAGAAAAAGAAAAAGGTTTCTAAAAAGTACTTCAATAGGGATGAGGAGAAGGAGAAGAAGAAAAAGAATGTGAATGAGATTTCTGATTTTGATAATGGTGAGGAGAAGAAGGGTTTGAGAATACCAAACAATGCAGAGGAGGAAGACAAAGAGGATAATTTGGATCCTTTGTGGCATGAATATAACAAATGTTTGATGGAGGAGGAGGAGCAGCAGTTGAGAGAGGTGAAGGATAAAAAAAGAGGAGTTTCTAATAATGAGAAGAAAAAGAAGGATTTAGATAATTCAGATAAACAGAAAAAAATGGAGAGCAATGCTTTCAATCAGAGGGGCCAGAGGGCCAAAAACGCGGATTTTACAACAAAGGATTTAAGTTTAGTAAAACTTCTTGCTGAATGCTTTTCAGACAAGAAAAATAGCATGAAGAATGATCCGGTTCTGTCGGAGGGGTACAGTGATAATGACAATGATGATGATGATGATGATGTTAATCAGTGTGATACAAGAAAACCGCCGGTTTGTGTTGAGACACCTCTGATATGGAGCCTAAAAAAGGTTCAAGAAGTGGAATTGACTGAAGAGGAGGAGGATGAACGGAGGAAAAATGAATCGTTAAAGCCGATATGGGATGAAATGGAAATGTTAACTAACAAATCAGAAGCTGAATCCAAGATTGGAAATTTGGGGACAAATGAAGCTACACAAGAAAAAAATGGAAGTCCATCATCTTGCTGTGAGCATGACATTATTTACGGCGAAGAGATAGGCAATTATTGCATATCGTGTGGTACGGTTATTACTGAGAGCAAATATAAGACACAACTAGTGAGGGATAGTTTTCCCAATGAAGGATACGAAAAAAGAGCTTCATCGGATGATTCAGGAAATGCCTCACTCATTAGTTGCTCTCAGTCTCAATTCAATGCTTCTGATGGTGATTTAGATGCTAATTTCTGTCATAAAAAAGGCACAGTTTGGGACCTAATTCCTGAAGTGAAAGAAACATTGTATCCTCATCAGCAGGAAGGTTTTGAAGTCATTTGGAAAAACTTGGCAGGAAGCATCAAACTTCGAAAGTTGAAGAACGTGGATCCTGACAGAGTGGGTGGCTGCATTATTTCACATGCTCCTGGAACTGGAAAAACTAGGTTAACTATTGTGTTCCTCATGGCTTATTTGAAAGTATTCCCTAAATGCTTTCCGGTTATCATTGCTCCTTCGGGTTTGTTACATACTTGGGAAGACGAGTTCAAAAAATGGAACATCGGAGTTCCATTTCACAATTTAAACAATGAGGAGTTATCTGGTAAAGAGCATGATGATGCTGTTAATGAGCTTAATTGGTCTAATGCACAGCATAGTAAGGAAGATACGCGGATGGTGAAACTGATATCATGGTACAAAGAAACGAGCATTCTTGGAATCAGTTACACTTTGTATAAGGAACTTGCTGGTGCAGTGCAATCTGAAAATAAGAAAATGAAAAACCAAGCAAGTGCGCAGAAAAGAAAAGAAATGGGAAAATCTCTGCGTGAAGTTCCTGGTTTGTTGGTGCTAGATGAAGGACACACACCGAGAAATAGAAGCAGTGGTATCTGGAAGGTGTTTTCGGAAATTTCAACAAAGAAGCGAATTATACTGTCAGGAACTCCTTTCCAGAACAACTGCTTGGAACTTTATAACACCCTCAGCCTTGTGAAGCCTTCTTTTCCGAACATGTTACCGCAGGAGCTGAAAAGGTTTTGCCAGAAGCAAGAACATAAGAAGGCATCATCGAAGGAATGGAGTTGGGAACCGGTTTCTGTAAGTAGTAAAACATCTGATGATTATATTCAGCAGTTGAAGATGCGTATGGATCCAATTGTGCACGTTCACAAAGGCGATATCCTTCAAAAGAAGCTTCCAGGGCTAAAAAACTGCGTGCTGCGTCTGAAGCCTGACAGTTTCCATCAGCAAATTCTCGAGAATTTTGATAGTTCTCAGAACGCATTGATATTTGAGAATAATCAAACAATGGTGTCAGTCCATCCATCTCTTTTTCTTGAATGCACACTCTCGGAACATGAAGAATCTTCTGTCGACAAGGACCGGTTAGAGAAGCTTAGACTGAATCATAAAGCAGGCGTCAAAACAAGGTTTCTGGTCGAGTTCGTTAGTCTTTGTGCTGCTGCCAATGAAAAGGTTCTCGTGTTCAGCCAATATCTCCGTCCTTTACACTTGATCATTGAGCAATTAAAGTCGGCATTAAAATGGACCGAGGATGAGGAGATTATGTACATGGATGGACAGGTTAAGGACAGACAATCCTTAATCCGTAGATTCAATGATTCAAACAGCCAAGCGAAGATTCTCCTTGCATCAACAAAAGCCTGTTCCGAGGGAATCAGCTTAGTCGGTGCTTCAAGGGTTGTACTCCTAGATGTCGAATGGAATCCGGCCGTTGAAAAACAGGCTATCAGCCGGGCTTATCGAATTGGGCAGCAGAAGGTTGTGTACACATATCACCTTCTCACTCAAGGGACTAGAGAGTGCGATAAGTACTGTAAACAGATTGAAAAGTACAGACTGTCTGAACTTATCTTTTCGGCTAAAAATGCCGACATCAATGACAAGTCAAAAAGCCGTGCGTCGAACATTGAAGATAGAATTCTTGATAAGATGATTCGGCACGAAAATCTCAAAGACTTGTTTGATGATTGTGTGATACAGGTTGAAGGAGCAAGAATGTAA 3495 0.3937 MVGVSSRTRSKNIPLFSSLSLNRSSSKRKKSDEDVLSLESVSGSKRRKLKDESFVLPKKDEVICFYDDDSDEEGLEHCDVNVKKEVKSYENGDKNGNFVDDEKCGWERENPIIMDSDDEDFVGSEADDEGDDVRKEVKVDESGGSGKFVDKNEVFIDVDDSDESDEDGEDSDESDENESSDEDFNVDEVKEISDHDDDSSSDSSFVDDVDDKEEEEEEEKKKKDWRKHLNGKYFNVVEKLAREVNDEKSEEEEEEEKKKKVSKKYFNRDEEKEKKKKNVNEISDFDNGEEKKGLRIPNNAEEEDKEDNLDPLWHEYNKCLMEEEEQQLREVKDKKRGVSNNEKKKKDLDNSDKQKKMESNAFNQRGQRAKNADFTTKDLSLVKLLAECFSDKKNSMKNDPVLSEGYSDNDNDDDDDDVNQCDTRKPPVCVETPLIWSLKKVQEVELTEEEEDERRKNESLKPIWDEMEMLTNKSEAESKIGNLGTNEATQEKNGSPSSCCEHDIIYGEEIGNYCISCGTVITESKYKTQLVRDSFPNEGYEKRASSDDSGNASLISCSQSQFNASDGDLDANFCHKKGTVWDLIPEVKETLYPHQQEGFEVIWKNLAGSIKLRKLKNVDPDRVGGCIISHAPGTGKTRLTIVFLMAYLKVFPKCFPVIIAPSGLLHTWEDEFKKWNIGVPFHNLNNEELSGKEHDDAVNELNWSNAQHSKEDTRMVKLISWYKETSILGISYTLYKELAGAVQSENKKMKNQASAQKRKEMGKSLREVPGLLVLDEGHTPRNRSSGIWKVFSEISTKKRIILSGTPFQNNCLELYNTLSLVKPSFPNMLPQELKRFCQKQEHKKASSKEWSWEPVSVSSKTSDDYIQQLKMRMDPIVHVHKGDILQKKLPGLKNCVLRLKPDSFHQQILENFDSSQNALIFENNQTMVSVHPSLFLECTLSEHEESSVDKDRLEKLRLNHKAGVKTRFLVEFVSLCAAANEKVLVFSQYLRPLHLIIEQLKSALKWTEDEEIMYMDGQVKDRQSLIRRFNDSNSQAKILLASTKACSEGISLVGASRVVLLDVEWNPAVEKQAISRAYRIGQQKVVYTYHLLTQGTRECDKYCKQIEKYRLSELIFSAKNADINDKSKSRASNIEDRILDKMIRHENLKDLFDDCVIQVEGARM 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00944 1164 Coils Coil 234 264 - -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 326 359 - -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 90 112 - -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 113 127 - -
Trre13g00944 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 843 IPR027417 -
Trre13g00944 1164 Gene3D - 569 868 IPR038718 -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 394 424 - -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 326 373 - -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 186 206 - -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 23 49 - -
Trre13g00944 1164 Pfam Helicase conserved C-terminal domain 976 1081 IPR001650 -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 90 224 - -
Trre13g00944 1164 CDD SF2_C_SNF 965 1092 - -
Trre13g00944 1164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 968 1127 IPR001650 -
Trre13g00944 1164 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 322 1158 IPR044567 GO:0080188
Trre13g00944 1164 MobiDBLite consensus disorder prediction 243 311 - -
Trre13g00944 1164 SMART helicmild6 994 1081 IPR001650 -
Trre13g00944 1164 Pfam SNF2-related domain 600 929 IPR000330 GO:0005524|GO:0140658
Trre13g00944 1164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 617 824 IPR014001 -
Trre13g00944 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 770 1130 IPR027417 -
Trre13g00944 1164 Gene3D - 888 1158 IPR027417 -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 128 155 - -
Trre13g00944 1164 Coils Coil 321 341 - -
Trre13g00944 1164 SMART ultradead3 587 836 IPR014001 -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 25 49 - -
Trre13g00944 1164 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00944 Trre-Chr13 7700029 7704317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00944 977 1098 RAD5 or RAD16-like Gene Family AT5G43530 37.903 4.68e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g00944 SNF2_N 3.3e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00944 K10875 - gmx:100812737 816.609