Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00943 ATGTTTGGTGTTTCAAGCAGAACTCGTAGCAAAAGTGTTCATTTGTTTTCTGGTGTTTCACTTGGCCGTTCATCTTCAAAGAGGAAAAAGATTGATGAAGATGTTATGAGTTTGGAATCTGTTTCTGGGTCTAAGAGAAGAAAGGAAAAAAATGAATCTTTTGTGTTTCCTAAGAATGATGAAGTTATTTTTATTGATGATGATGATGATTATGATGAAGAAGGGTGGGAGGATTGTGATGTTGATGTTAAAAAGGAAGTGAAAAGTTATGAGAGCGGAGGAAGTTGTGAAATTGGTGATAAAAATGGAAACTTTGTTGTTGATGATGAAAAGTGTGGTTGGGAAAGGGAAAACCCGATTATACTGGATTTGAATGATGATGATGATGAACAGTTTGTTGGTTCTGTGGCTGGTAGAAAGAAAGTGAAAGTTGATGAAAGTGGTGGAAGTGGTAAGTTTGTTGATAAAGATGTAATTTTTATTGATGTGGATGATTCTGATGAGACTCATGAGAGTGATGAAGATGATGATGATGATGATTCTGATGAAAGTGAAGATGAGACTAGTGATGAGGATTTTAATGTTGACGAGGTGAAAGAGACTATTGATGATGATGATGACAGTTCTGTGTCTTCTTTTGCTGATGATGTTGATAATGATGATGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAAAAGGGTTCGAGAAAAGACTTGAATGGGAGATACTTCAATGTGGTGGAGATGCTGGCTAGAGAGGTGAATGGTGAGAAAAGTGAGGAGGAGGAGGAGGAAGAGAAAAAGAAAGAGGGTTCTAAAAAGTACTTCAATGTGGTGGAGGAGGTGAGTAGAGAGGTGAATGATGAAAAAATTGGGGAGGAGGAGAAGGAGGAGAAGAAGGTGGATGAGATTTTTGCTGATGTTATTGTTGATAATAATGAGAAGGAGGTTAGGGATGAGCAGACGGAGAAGAAGAATGTGAATGAGATTTCTGATTGTGATGTTGTAAGTTCAAATGATGTTATTGTTGATGATGATGAGGAGAAGGTTAGGGATGAGGAGAAGAAGCCAAACAATGTGGTGGAAGAGGACAAAGAGGACAATTTGGATCCGTTGTGGCACGAATGTCACAATTGTTTGATGGAGGAGGAGAAGGAGCTGTTGAGAGAGGTGAAGGATCAAAAAAGTGGAGTTTCTAAGACGAATAATGAGAAGATAAAGATTAAGACTAGTGAAGTGCAGCATTCTGGTTATGATAGTGCAACAGCCTCTACTACCTTTAATCCAATGAAGGGTTCTTCTTCAAAGCGGTATGAAGCATCAGAGACACATGCAAAATGTGTGGAAATTTCAATGCGGAATGAAGCATCAGAGACACTTATAGCAAAAACCAAAGAGAGTGCTAAACCTATTAAAAATGTGAAGGTTGGTGATTCTGTTAAAGGAAAAGAGCGACACGGGAAAGGTTTAGGTGTTGGAGGAGTTTCTTCGGTTCAAACCAAGCAAGAAAAGGTGAAGGATTTAGATAAACCTACTGAAAATGTGAAGGTTGGTTCTGTTGAAGGAAAAGATCAACCTGTCAAAGGTTTAGGTGTTGGAGGAGTTTCTTCGGTTCAAACCAAGCAAGAAGAGGTGAAGGATTTAGATGAACCTACTGAAAATGTGAAGGTTGGTTCTGTTGAAGGAAAAGAGCGAAATGTCAAAGGTTTAGGTGTTGGGGGAGTTTCTTTGGTTCAAACCAAGCAAGAAATGGTGAAGGATTTAGATAAACCTACTGAAAATGTGAAGGTTGGTTCGGTTGAAGGAAAAGGGCGACATGGCAGAGGTTTAGTTGTTTCAGGAGTTTCTTCGGTTCAAATCAAAGAAGAAAAGGTGGAGGATTTAGATAAACAGAAAATGGTGGAGAACAAACCAAGAGAAGATTGTAAAGATGGAATTAACATCCAAAATGGTGTTAAGAAAGAATCCAAGGATAACAATGGTTTGAATCGAAGTGGCAAAAGTACACATTCTATGCCGAACAAGTTACCTTTAGCCCAATACCTTGCTGAATTGTATTTGAGAAACAAGAATGATACCACGAAGAATGCTTCAGTTGTGTTGGAGATGAATGATGACGGTGTTAATCAGAAAGATACACGGCAACCACCGGTTTGTGTTGAGACACCTTCGTTGAGATGGAGTCTAAAAAGGGTTGTGCAAAAGACCAAGGAGGAAGAGGAACTGGATAAGGAACTGGAGCAGATTAAACCGATATGGGATGAAATGGAAAGAGCCATGAGAGAAGCAGAAGCTGAATCTGAGATTGGAAATTTAGGGACAAATAGAAGTCCATCCCCTCACTGTGAACATATCACTATTCTTGACGAACAGCTTGGTATATATTGCAAATTGTGCGGTGATGTTATTACTGAGATGAAATATATCTCGGAGCTAGTGTTGGATAAATATCCGAACGAAGGTTCACGAAGAAGGGCGACAATTGGTGGAGACGATGTCTCACTCTTTGATCGGTCTCACTTCAATGTTACTGATGATGATGACTCGAAGGATAATGTTTCTCATACTGAAGTCACAGTTTGGGACAAAATTCCTGATGTGAAGCAAACCTTATATCCTCACCAACAAGAAGGCTTTGAGTTCATTTGGAGAAACTTGGCTGGAAGCATCGAGCTTCAAACGTTAAAGAATGCTGATCCTCGAAGCGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACGATAGTGTTTCTCAAGTCATATTTGAAGTTATTTCCAAAATGCTTGCCGATTGTTGTCGCTCCTGCTAGTTTACTACTAACTTGGGAAGAGGAGTTCAAGAAATGGGACGTCGGAGTTCCATTTCACAATTTAAGCAATTTAGAGTTATCTGGTAAAGAGCATGCTGATGTGTTTAACAGATTCAGTAGGTTTAATACACGGGATCAAATGAACGAAACAAGAATAGCGAAACTGATTTCGTGGTACAAAGAAACAAGCATTCTTGGAATCAGCTATAGTTTATATGGACAAATTTGCCATGATAAGGAAAAGAAAAAGAATGAAAATGTGAAGGCTAGAAAAGGAAACTATGATATACAAAAAGTTCTACTCGAAGCTCCTGGTTTGTTAGTTTTGGATGAAGGACATACACCTAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGACGAAGAAGAGTCAAACGCAGAAGCGAATCATCCTTTCTGGAACTCCATTCCAGAATAATTTCTGGGAGCTTTACTGCACTTTGAGCTTAGTAAAGCCTTCATTTCCTAACAAGATACCGCCTGAGCTAAAAAAGTTTTGCCTTAAGCAGAGACTTTCATCTGAAAAATATGGTTGGGAACAAGTTTCAGGCAACACAGCAAGAAACCCTTCCGATGATGATGAGATCGAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTGAAAGCAAGCTTCCCGGGTTGAAAGAATGCTTGGTGACTTTGAAGGCAGGTAGTTTGCAGAATGAAATTTTGAAAGGAATTAAACGTTCTCAGAACAGAATCTTTAACTTCGAGCGTAAGATTGCATTGACATCCGTTCATCCATCTCTTTTCCTTGAATGTGATCTTTCTGAAGCAGAAAAATCTGTACTCGACAAGGATCGGCTAAAACAGATCAGACTGAACCCACATGAAGGAGTCAAAACAAAGTTTGTGTACGAGTTTGTTCGGCTGTGTGATGCTTCTAACGAGAAAGTTATTGTTTTCAGCCAATTCCACGCTCCTTTAGAATTGATTCAAGACCAATTAAACTCGGCTTTTAACTGGTCTAAGGGAGAAGTGCTGTTCATGTCTAGCAAAGATTCTCCAAAGGTTAAGCAGTCCATAATCCATAACTTCAATGATGAAAATAGCAACTCGAAGATTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGATGTCGTATGGAATCCTTCGGTCGAAAGACAAGCTATCAGCCGAGCCTATAGGATTGGACAGAAGAAGGTGGTATACACATACCATCTTCTTGCTGAAGGGACTACCGAGGAACAAAAATATGGTAAACAGGCCGAAAAGGATCGGTTATCTGAGCTCCTTTTTTCAGCTAAAAATGCTACTGATAACGATGATGTGCCCAAGAAACGTTCCGTGAACTTTGAAGATAGTGTTCTTGATAAGATGACTCAGCACGAAAAGCTCATAGACATGTTTGTTAAGTGCGTCGTACTGAGGAAGGAGCGAGACTTGGTCTGA 4356 0.3985 MFGVSSRTRSKSVHLFSGVSLGRSSSKRKKIDEDVMSLESVSGSKRRKEKNESFVFPKNDEVIFIDDDDDYDEEGWEDCDVDVKKEVKSYESGGSCEIGDKNGNFVVDDEKCGWERENPIILDLNDDDDEQFVGSVAGRKKVKVDESGGSGKFVDKDVIFIDVDDSDETHESDEDDDDDDSDESEDETSDEDFNVDEVKETIDDDDDSSVSSFADDVDNDDEEEEVEEEEEEEKKKKGSRKDLNGRYFNVVEMLAREVNGEKSEEEEEEEKKKEGSKKYFNVVEEVSREVNDEKIGEEEKEEKKVDEIFADVIVDNNEKEVRDEQTEKKNVNEISDCDVVSSNDVIVDDDEEKVRDEEKKPNNVVEEDKEDNLDPLWHECHNCLMEEEKELLREVKDQKSGVSKTNNEKIKIKTSEVQHSGYDSATASTTFNPMKGSSSKRYEASETHAKCVEISMRNEASETLIAKTKESAKPIKNVKVGDSVKGKERHGKGLGVGGVSSVQTKQEKVKDLDKPTENVKVGSVEGKDQPVKGLGVGGVSSVQTKQEEVKDLDEPTENVKVGSVEGKERNVKGLGVGGVSLVQTKQEMVKDLDKPTENVKVGSVEGKGRHGRGLVVSGVSSVQIKEEKVEDLDKQKMVENKPREDCKDGINIQNGVKKESKDNNGLNRSGKSTHSMPNKLPLAQYLAELYLRNKNDTTKNASVVLEMNDDGVNQKDTRQPPVCVETPSLRWSLKRVVQKTKEEEELDKELEQIKPIWDEMERAMREAEAESEIGNLGTNRSPSPHCEHITILDEQLGIYCKLCGDVITEMKYISELVLDKYPNEGSRRRATIGGDDVSLFDRSHFNVTDDDDSKDNVSHTEVTVWDKIPDVKQTLYPHQQEGFEFIWRNLAGSIELQTLKNADPRSEGGCIISHAPGTGKTRLTIVFLKSYLKLFPKCLPIVVAPASLLLTWEEEFKKWDVGVPFHNLSNLELSGKEHADVFNRFSRFNTRDQMNETRIAKLISWYKETSILGISYSLYGQICHDKEKKKNENVKARKGNYDIQKVLLEAPGLLVLDEGHTPRNQRSHIWKVLTKKSQTQKRIILSGTPFQNNFWELYCTLSLVKPSFPNKIPPELKKFCLKQRLSSEKYGWEQVSGNTARNPSDDDEIEKLKLLMDPFVHVHKGAILESKLPGLKECLVTLKAGSLQNEILKGIKRSQNRIFNFERKIALTSVHPSLFLECDLSEAEKSVLDKDRLKQIRLNPHEGVKTKFVYEFVRLCDASNEKVIVFSQFHAPLELIQDQLNSAFNWSKGEVLFMSSKDSPKVKQSIIHNFNDENSNSKILLAATKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTTEEQKYGKQAEKDRLSELLFSAKNATDNDDVPKKRSVNFEDSVLDKMTQHEKLIDMFVKCVVLRKERDLV 1451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00943 1451 MobiDBLite consensus disorder prediction 159 240 - -
Trre13g00943 1451 Coils Coil 314 334 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 478 565 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 506 521 - -
Trre13g00943 1451 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 413 1449 IPR044567 GO:0080188
Trre13g00943 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 864 1113 IPR027417 -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 655 677 - -
Trre13g00943 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1405 IPR027417 -
Trre13g00943 1451 SMART ultradead3 871 1124 IPR014001 -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 417 440 - -
Trre13g00943 1451 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 901 1107 IPR014001 -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 478 492 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 395 444 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 395 416 - -
Trre13g00943 1451 SMART helicmild6 1278 1366 IPR001650 -
Trre13g00943 1451 Gene3D - 1173 1440 IPR027417 -
Trre13g00943 1451 Coils Coil 251 271 - -
Trre13g00943 1451 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1252 1412 IPR001650 -
Trre13g00943 1451 Gene3D - 840 1134 IPR038718 -
Trre13g00943 1451 Coils Coil 219 239 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 546 565 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 166 230 - -
Trre13g00943 1451 Pfam SNF2-related domain 889 1194 IPR000330 GO:0005524|GO:0140658
Trre13g00943 1451 Pfam Helicase conserved C-terminal domain 1259 1366 IPR001650 -
Trre13g00943 1451 CDD SF2_C_SNF 1249 1377 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 257 277 - -
Trre13g00943 1451 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00943 Trre-Chr13 7691997 7697234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00943 1264 1424 RAD5 or RAD16-like Gene Family AT5G05130 36.420 2.19e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g00943 SNF2_N 2.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00943 K10875 - gmx:100806733 779.63