Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00941 ATGGGCCTAAAGCCCAAACCATTCGAAAACAGTGATGAAGCCAAAGAACCACATTTAAAACGTTGTCGTAATAATGCAACTTATAGTAACAGGAACAACAGAGAGAACAAGAAGAAAAAAGACGACGAGGAAAGCACATCATCATCGAAACATATAGTTTTTGATGAAGATGTTTCCAAGGGAATTGAGGTTGTTCCTGTATCGATGGTCAACGATGTGGATTGCAAAAAAGTTCCAGTTTTTCGATACATAACTCGCATGATATATCCAAAATGGTGTAATCCCGTTAAAGGTCCTTATGTGGGGTGCAATTGCACTGGTGAATGTTCTGATTCTGTAAAATGTTTTTGTGCTTTAAAGAATGAAGGGAAAATTCCTTTTGATAAGAATAAAGCTATTAGGACAACAGAACAAGATATAATTTATGAGTGTGGTCCTTATTGTAAGTGTTCCTCAAGTTGTCGCAATAGAGTCAGTCAAAATGGCATTAAATTTAAGCTTCAGATTTTCAAGACGAAGACAAAAGGTTGGGGTGTCAGATCACATAATAGAATTCCTGCTGGAAGTTTTGTTTGTGAATATTTAGGTGAAATTATAGACGACGAAGAAGCTGTGAAAATGATTGATAACGATCAATATTTATTTAATATTGGTAATAATCTCAGTGGCGATATCTATGGCAACTATACCATTAATGCCGATCACTATGGTAATGTGGCAAGATTCATCAACCATAGTTGTTCTGCGAATTTGTTTTGTCAAAGAGTTCTGTATGATCACGATGATGGTAGGATTCCCCACATGATGCTATTTGCAGCCAGGGACATTCCAAAAATGCAAGAACTGACTTTGGATTACCATTACGAAATTGATCAAGTGATTGATTCAAATGGAAAGGTAAAGAAGAAGAAATGCTATTGTGGTGCTTTGGAATGTTGTGGCAGGTTGTATTAA 954 0.3616 MGLKPKPFENSDEAKEPHLKRCRNNATYSNRNNRENKKKKDDEESTSSSKHIVFDEDVSKGIEVVPVSMVNDVDCKKVPVFRYITRMIYPKWCNPVKGPYVGCNCTGECSDSVKCFCALKNEGKIPFDKNKAIRTTEQDIIYECGPYCKCSSSCRNRVSQNGIKFKLQIFKTKTKGWGVRSHNRIPAGSFVCEYLGEIIDDEEAVKMIDNDQYLFNIGNNLSGDIYGNYTINADHYGNVARFINHSCSANLFCQRVLYDHDDGRIPHMMLFAARDIPKMQELTLDYHYEIDQVIDSNGKVKKKKCYCGALECCGRLY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00941 317 ProSiteProfiles Post-SET domain profile. 301 317 IPR003616 -
Trre13g00941 317 ProSiteProfiles Pre-SET domain profile. 101 162 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g00941 317 MobiDBLite consensus disorder prediction 1 49 - -
Trre13g00941 317 SMART set_7 165 293 IPR001214 GO:0005515
Trre13g00941 317 Gene3D SET domain 46 317 IPR046341 -
Trre13g00941 317 SUPERFAMILY SET domain 49 293 IPR046341 -
Trre13g00941 317 SMART preset_2 55 149 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g00941 317 Pfam SET domain 176 286 IPR001214 GO:0005515
Trre13g00941 317 Pfam Pre-SET motif 59 157 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g00941 317 ProSiteProfiles SET domain profile. 165 287 IPR001214 GO:0005515
Trre13g00941 317 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 309 - -
Trre13g00941 317 MobiDBLite consensus disorder prediction 32 49 - -
Trre13g00941 317 MobiDBLite consensus disorder prediction 8 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00941 Trre-Chr13 7675936 7676889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00941 45 317 EF-hand Containing Proteins AT5G13960 40.328 1.57e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g00941 SET 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00941 K11420 - cam:101497063 341.658