Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00938 ATGGCTAATCTCTCCAACTCGAGCATTCAAAATGATGAGAAACACCTTGGAGAGCAATTTAATTACACCCCACATGATGTACTACAAAATTTGGAATGGTACCCCACTTTTTCAGAAATCATGGATAAAAGTTTGCAAAAAGATTTGAATTATTATTTCCTCTTTTGTGACACTCATGAGAAAGAAAGTGTCAAATTGAATCAATTGGGTGAAGGAATAACACAAGAGAATGTGTCAAATGTTCAAATAAATCAAGAGATGAATATTGATACAAGTTTGCCTAATATTGATAGCATCAATCATGAGTATCTACCAAAGAAAAATAAGAAGTCTTGTTCTACTAAGAAGAGTAAAGATAAGAGTCTCAAAGCAAAGAGCATAGATAAAAATAATGAGAAGTTTTGTGCTATTAGGAAGAGTAAAGATAAGAGTCTCAAAGCAAAGAGCATAGAAAAATATGTTGAGAGAATGTGTAGCCATTGTGAGACCAAAGACACTACTCAATGGAGGTTTGGTCCTTTGGGGAGAAATACTTTATGCAATGCTTGTGGATTGCGATACAAGTCAAATCGATTGACAGAAGAGTATAAACCTAAGGCAAGTTCAAATACTGATATTATAAAACATTCAAATTTGCATAAGATCTTGTGA 651 0.3318 MANLSNSSIQNDEKHLGEQFNYTPHDVLQNLEWYPTFSEIMDKSLQKDLNYYFLFCDTHEKESVKLNQLGEGITQENVSNVQINQEMNIDTSLPNIDSINHEYLPKKNKKSCSTKKSKDKSLKAKSIDKNNEKFCAIRKSKDKSLKAKSIEKYVERMCSHCETKDTTQWRFGPLGRNTLCNACGLRYKSNRLTEEYKPKASSNTDIIKHSNLHKIL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00938 216 ProSiteProfiles GATA-type zinc finger domain profile. 152 210 IPR000679 GO:0006355|GO:0043565
Trre13g00938 216 PANTHER GATA TRANSCRIPTION FACTOR 82 214 - -
Trre13g00938 216 Pfam GATA zinc finger 158 192 IPR000679 GO:0006355|GO:0043565
Trre13g00938 216 CDD ZnF_GATA 158 208 IPR000679 GO:0006355|GO:0043565
Trre13g00938 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 196 - -
Trre13g00938 216 Gene3D - 148 214 IPR013088 GO:0006355|GO:0008270
Trre13g00938 216 SMART GATA_3 152 207 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00938 Trre-Chr13 7664008 7664658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00938 22 214 C2C2-Gata Transcription Factor Family AT4G32890 32.161 2.47e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre13g00938 GATA 2.3e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00938 - - tpra:123892034 340.502