Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00933 ATGATTAGTTTGTGGTTGGTTGACATATCGTATAACCAGTTGACGGGTGCACTTCCAAATGTGCGAGCATTCAATAACGCTACTTTTGAAGTGTTGAGAAATAATGCAGGCTTGTGCGGTAATGTTTCTGGCTTGAAGCCTTGCATAAAACCAACCAGTGGATCTCATAATAATGTGATTAAGAAAATGATATTTTTCATAGTGTTACCTCTAGCACTGGGAACTCTAATGCTAGCGATCGTTTGTTTCAAATTTTCGTATTGTTTCTGTCATTCGTCAACCACAAGAGAAAACCAGGATGGAGGAAACATCATTGCTCCTAAAAATGTATTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGATGATTTTGATGACAAACATCTTGTTGGAGAAGGAGCGTATGGAAGTGTTTACAAAGCAGAGTTGCAGACAGGTCAAGTAGTTGCTGTTAAAAAACTCCATTCAGTGGCAGATGCAGAAAATCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGTTATATGGATTTTGTTCACATTCACACTTATCGTTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAATGATTTTGAAAGATGATAATGAAGCAATTGCATTTGATTGGTATAAGAGGGCAAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCCCCTCCGATTGTTCATCGAGATATATCGAGCAAGAATATTCTTCTGGATTTAGAATATGTGGCTCATGTCTCCGACTTTGGAACAGCTAAGCTTCTTAATCTTAATTCATCTAATTGGACCTCTTTTGCAGGCACATTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAAAATGATCTGTATAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAACACCCTGGAGATATTGTATCTAATTCTTTACAATGGATTATCATGGGATCAACACTTGATAGTATGCCATTGATGAATAAGTTTGATCAACGGCTCTCTCGTCCAGTGAATCATCGACAAGCTAAGGAGTTAGTATCTATTGTAAAGACAACAATTTCTTGTTTGGCTGATAGACCACAAGCTCGCCCTACCATGGAGGAGGTTTCTAGGGAGCTTTTAAGTGTGTAG 1224 0.3758 MISLWLVDISYNQLTGALPNVRAFNNATFEVLRNNAGLCGNVSGLKPCIKPTSGSHNNVIKKMIFFIVLPLALGTLMLAIVCFKFSYCFCHSSTTRENQDGGNIIAPKNVFTIWSFDGKMVYENIIEATDDFDDKHLVGEGAYGSVYKAELQTGQVVAVKKLHSVADAENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEMILKDDNEAIAFDWYKRANAIKDVANALCYMHHDCSPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNLNSSNWTSFAGTFGYAAPELAYTMEVNEKNDLYSFGVLALEILFGKHPGDIVSNSLQWIIMGSTLDSMPLMNKFDQRLSRPVNHRQAKELVSIVKTTISCLADRPQARPTMEEVSRELLSV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00933 407 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Trre13g00933 407 FunFam Leucine-rich repeat receptor protein kinase MSP1 94 210 - -
Trre13g00933 407 FunFam MDIS1-interacting receptor like kinase 2 211 407 - -
Trre13g00933 407 ProSitePatterns Tyrosine protein kinases specific active-site signature. 256 268 IPR008266 GO:0004672|GO:0006468
Trre13g00933 407 Pfam Protein kinase domain 133 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00933 407 PANTHER LEUCINE RICH REPEAT KINASE 2 2 406 - -
Trre13g00933 407 SUPERFAMILY Protein kinase-like (PK-like) 112 404 IPR011009 -
Trre13g00933 407 Gene3D Transferase(Phosphotransferase) domain 1 211 407 - -
Trre13g00933 407 ProSiteProfiles Protein kinase domain profile. 132 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00933 407 Gene3D Phosphorylase Kinase; domain 1 100 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00933 Trre-Chr13 7654303 7655912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00933 1 304 Receptor kinase-like Gene Family AT4G08850 49.196 3.26e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00933 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00933 - - tpra:123888271 739.184