Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00932 ATGCTTGGAAAGCTGCAACTCTTAGAAACATTGAATATTTCACATAACAGTCTTTCTGGATTTATCCCCTCTTTCTTGGATCAAATGATTAGTTTGTGGTTGGTTGACATATCGTATAACCAGTTGACGGGTGCACTTCCAAATGTGCGAGCATTCAATAACGCTACTTTTGAAGTGTTGAGAAATAATGCAGGCTTGTGCGGTAATGTTTCTGGCTTGAAGCCTTGCATAAAACCAACCAGTGGATCTCATAATAATGTGATTAAGAAAATGATATTTTTCATAGTGTTACCTCTAGCACTGGGAACTCTAATGCTAGCGATCGTTTGTTTCAAATTTTCGTATTGTTTCTGTCATTCGTCAACCACAAGAGAAAACCAGGATGGAGGAAACATCATTGCTCCTAAAAATGTATTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGATGATTTTGATGACAAACATCTTGTTGGAGAAGGAGCGTATGGAAGTGTTTACAAAGCAGAGTTGCAGACAGGTCAAGTAGTTGCTGTTAAAAAACTCCATTCAGTGGCAGATGCAGAAAATCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGTTATATGGATTTTGTTCACATTCACACTTATCGTTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAATGATTTTGAAAGATGATAATGAAGCAATTGCATTTGATTGGTATAAGAGGGCAAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCCCCTCCGATTGTTCATCGAGATATATCGAGCAAGAATATTCTTCTGGATTTAGAATATGTGGCTCATGTCTCCGACTTTGGAACAGCTAAGCTTCTTAATCTTAATTCATCTAATTGGACCTCTTTTGCAGGCACATTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAAAATGATCTGTATAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAACACCCTGGAGATATTGTATCTAATTCTTTACAATGGATTATCATGGGATCAACACTTGATAGTATGCCATTGATGAATAAGTTTGATCAACGGCTCTCTCGTCCAGTGAATCATCGACAAGCTAAGGAGTTAGTATCTATTGTAAAGACAACAATTTCTTGTTTGGCTGATAGACCACAAGCTCGCCCTACCATGGAGGAGGTTTCTAGGGAGCTTTTAAGTGTGTAG 1308 0.3746 MLGKLQLLETLNISHNSLSGFIPSFLDQMISLWLVDISYNQLTGALPNVRAFNNATFEVLRNNAGLCGNVSGLKPCIKPTSGSHNNVIKKMIFFIVLPLALGTLMLAIVCFKFSYCFCHSSTTRENQDGGNIIAPKNVFTIWSFDGKMVYENIIEATDDFDDKHLVGEGAYGSVYKAELQTGQVVAVKKLHSVADAENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEMILKDDNEAIAFDWYKRANAIKDVANALCYMHHDCSPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNLNSSNWTSFAGTFGYAAPELAYTMEVNEKNDLYSFGVLALEILFGKHPGDIVSNSLQWIIMGSTLDSMPLMNKFDQRLSRPVNHRQAKELVSIVKTTISCLADRPQARPTMEEVSRELLSV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00932 435 Gene3D Ribonuclease Inhibitor 1 84 IPR032675 -
Trre13g00932 435 ProSitePatterns Protein kinases ATP-binding region signature. 166 189 IPR017441 GO:0005524
Trre13g00932 435 Gene3D Transferase(Phosphotransferase) domain 1 239 435 - -
Trre13g00932 435 Pfam Protein kinase domain 161 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00932 435 ProSiteProfiles Protein kinase domain profile. 160 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00932 435 Gene3D Phosphorylase Kinase; domain 1 128 238 - -
Trre13g00932 435 FunFam MDIS1-interacting receptor like kinase 2 239 435 - -
Trre13g00932 435 FunFam Leucine-rich repeat receptor protein kinase MSP1 122 238 - -
Trre13g00932 435 PANTHER LEUCINE RICH REPEAT KINASE 2 1 434 - -
Trre13g00932 435 SUPERFAMILY L domain-like 2 70 - -
Trre13g00932 435 SUPERFAMILY Protein kinase-like (PK-like) 140 432 IPR011009 -
Trre13g00932 435 ProSitePatterns Tyrosine protein kinases specific active-site signature. 284 296 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00932 Trre-Chr13 7654219 7655912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00932 5 332 Receptor kinase-like Gene Family AT4G08850 49.552 2.75e-98 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00932 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00932 - - tpra:123888271 784.252