Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00929 ATGGAAAATGATGCTAATGAAAACATCTTTAGCACATCCTCATTCTCCTCAACATCATCAACACCAACATCACCAACATCTTCTAACTCAAATTCAAATTCATGTACCAATCAAAATCAAGACACCAAAAATAGTCCTCAAAATGAAACAAAGTCCAAGAAAAGAGAGAGAAGTGAAAAAGACACAAAACACCCTACATATAGAGGAGTAAGAATGAGAGCATGGGGAAAATGGGTTAGTGAAATACGTGAGCCAAGAAAGAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCTATAAAGGGTCATTCAGCTTACCTTAATTTCCCAAATTTGGCTCAAAATCTTCCAAGGCCTTCAACTACATCACCTAAAGACATTCAAATTGCAGCTGCAAAAGCAGCATCAACTGTTTTTGTGGAAGTTAAGGATTGCCAAGGTGAAAATGATCAACATGTACAAAATCATGAAGATCAAGGTTCTTTTTCAAGTGTGTCTTCTATAGACAATGTTCAAGAGTCTAATTCAAGTTCTCCTAATTCTACTACTACTAGTACTACTACTACGAATGATGATATTGATGACACACTCTTCGATTTGCCGGATCTTTTTCTTGATGGAAAAAAAAGTCTTCTTTCTTTTTCTTCTTCTTGGCATTTATGTAGTGTTGATAGTGGACTTCGGCTCGAGGAGCAATTTTCGTCGTCGTGGGAGTACTTCTAG 762 0.3727 MENDANENIFSTSSFSSTSSTPTSPTSSNSNSNSCTNQNQDTKNSPQNETKSKKRERSEKDTKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQIAAAKAASTVFVEVKDCQGENDQHVQNHEDQGSFSSVSSIDNVQESNSSSPNSTTTSTTTTNDDIDDTLFDLPDLFLDGKKSLLSFSSSWHLCSVDSGLRLEEQFSSSWEYF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00929 253 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Trre13g00929 253 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Trre13g00929 253 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Trre13g00929 253 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Trre13g00929 253 MobiDBLite consensus disorder prediction 169 205 - -
Trre13g00929 253 MobiDBLite consensus disorder prediction 1 46 - -
Trre13g00929 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 45 219 - -
Trre13g00929 253 MobiDBLite consensus disorder prediction 164 205 - -
Trre13g00929 253 MobiDBLite consensus disorder prediction 1 68 - -
Trre13g00929 253 MobiDBLite consensus disorder prediction 47 68 - -
Trre13g00929 253 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Trre13g00929 253 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Trre13g00929 253 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Trre13g00929 253 Pfam AP2 domain 65 116 IPR001471 GO:0003700|GO:0006355
Trre13g00929 253 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00929 Trre-Chr13 7611502 7612263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00929 54 246 AP2-EREBP Transcription Factor Family AT2G44940 53.140 5.62e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g00929 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00929 - - psat:127129327 288.5