Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00928 ATGGGGAGTATGGGTGAACATGATAGAAAACGGCGTTTTAGCTCTTTGTCACCTACACCTGCAACTGCCAAGAAGTTACCCTTTTTGCCAGTTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTATCAAAATCAAAAGCTCACACAGAAATTAGAGACTCAGAAGTTAGAATATACAGCTCTTGAGAATAAATTTTCTCAACTGAAGGAGAGGCAACAGTCGTATGATTCTACCTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTAGAGTCACGTTCTGAACGCACAAGGGAATCTAGCTGCAAAGCAGATTCCAGATATGCATCAAACACAAATGATGGTACTTCGTCTACTGTTCAAGATGTTTTTCTTAGTCGACTTTTGCAAACTGGTGCAACTGAAAGTTCCTCCTCTTATCACTTTGCAAACGAGATGGAACAACATAGAGAAATCACTTCTGAAAAAGTTAAAAGGATTTTGAATAATATATTGACATCTAGTAGTAACTCTCATTGTCTGAAAGATGGATTTCATACTGCACTACTGCAAAAGCTTCGAGAAGATGTTTCATGTGGGCAGATGTTATCTAATGATCTGGAGTTGGAAAGTAAAAACTTGAGATTGTCATTAAGTGAACTTCACTTAAAGCACAAGTCATTAGCAAGTGAATTCCGAATTCAGAGGGATCTGGATGCCAAAAATAAAGCTGAGCTTAAACGATTAAAAGGGGAACTGGAAAGCACAGTTGCAGAGTTAGAAGAAATCAATCACAACCTTGCAACTCTTAAGGTAGAGAAAGATGCAGCCAAAGGGGCAATTCTCCCAGTATTAGCTGTTGGGAATACACATATTCCTAATGATAAGATCAAAGACAAACAAAAGGATTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCGAGCTTCAACACGATTAGTGGAACTGAAACGTCTTCACGAGGAAAGAATAAGATTATTACAGCAATTGTGCGATATACAGAACACAGTGAAGAATTTGAAGTGTATTACATCTTCCCATGCATTCCAATTGGTTAGAGATCAGATAGAAAAATCAAAATCTGAAGTGCAGGAGTATCAGGCATTATATGAGAAACTACAGGCTGAGAAGGATAATCTTGCATGGAAGGAAAGGGAGTGGTACATTAAAAATGATTTAGCTGATCTTTTTCAAAGATCTGCGACAGTTTCTGATCTTAGAGTGGCTGATATACGCACTGAGATACAGAAAGCGATAGAGCAAAGAAATGTGATTGAAAATAGGCTGAAAGAGGAAGCAAGAGAACCAGGAAGGAAAGAAATTATTGCCGAATTTAAATCTCTGCTTTCTTCGTTTCCTGAGGAAATGGGATCCATGCAAAGTCAACTTACTAAATGTAAAGAATCAGCTTCAGATCTCCATTCTTTGCGTGCAGATGTGCATTCAATTTCCAGTATCCTTGATCAGAAGGTAAAAGAATGTGATGCATTATCGGTTAGGTCTGCAGGTCAACTTGCTGAGATAAACAGACTGCTTGCGGTGGTTCAAGATTTGCGAGTGACCGAGGATGAGATGAAGTTGATACTGCAAATGTATAGACACGAGACCATTGATTCAAGGGATACCATGGAAGCAAGGGAAGCAGAATACAGAGCATGGGCGCATGTTCAAAGGTTGAAATCATCTCTTGATGAGCACAATTTAGAACTTCGAGTTAAAACAGCAATTGAATCAGAAGGCAGATCAATGCAAAAACTTGCTGCGGCTGAAGCTGAGATTGCAGACATGAGACATATATTAGATGATTCTAAAAGGGAGATGTCTAAATTGTCTAATGTCTTGAGATCTAAAAATGAAGAAAATGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACCCAAAACCAACATCTGTTGCATCAGATTACTGAGAGAGATGATTATAATATTAAGCTTGTTTTAGAAGGGGTAAGGGCTAGACAAAAAACCGATTCTTTGATCATGAAGAAGCAATTAATGGAACAAGAGATCCAGCAATCAAATGTATCTCTGAATTTATATGATACGAAAGCTGCCAGAATTGAAGAACAGATTCAAAAACTTGCGGACAATAAATCTCAAAGTTCTGTCGGTTTGGAAAATGCACAAAGAAGGTTGTCGGATATCAGAACATCATCGCAACAAGTTAGGGATACAGTGGTGGAAGTGCAATCTAAAATTACAAGTAGTCGGGTGACTTGTATGGAGTTAGAAGTAGAACTCGATAAAGAAAGGTTTGACAAAAAAAAAGTAGAAGAAGATCTGGAGGTTGCTAGGAGAAACTTGTCACGTCTTAAAGCACAAGACGAGGACTCCTCAGTAACTGATAAGCTTCAACAGGAACTGGGAGAGTACAGGGAAATTGTCAAATGCAGTATCTGTCGAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAACTCATGTATCCAGAAAGTTGCTGGGAGTCGACAGCGCAAATGTCCACAATGTGGTGCATGCTTTGGGGCTAATGATGTTAAGCCAGTTTATTTGTAA 2613 0.3865 MGSMGEHDRKRRFSSLSPTPATAKKLPFLPVSEDKKLDIAVLQYQNQKLTQKLETQKLEYTALENKFSQLKERQQSYDSTLAVVKKSWEQLVNDLESRSERTRESSCKADSRYASNTNDGTSSTVQDVFLSRLLQTGATESSSSYHFANEMEQHREITSEKVKRILNNILTSSSNSHCLKDGFHTALLQKLREDVSCGQMLSNDLELESKNLRLSLSELHLKHKSLASEFRIQRDLDAKNKAELKRLKGELESTVAELEEINHNLATLKVEKDAAKGAILPVLAVGNTHIPNDKIKDKQKDLQDMESTLKELLDRASTRLVELKRLHEERIRLLQQLCDIQNTVKNLKCITSSHAFQLVRDQIEKSKSEVQEYQALYEKLQAEKDNLAWKEREWYIKNDLADLFQRSATVSDLRVADIRTEIQKAIEQRNVIENRLKEEAREPGRKEIIAEFKSLLSSFPEEMGSMQSQLTKCKESASDLHSLRADVHSISSILDQKVKECDALSVRSAGQLAEINRLLAVVQDLRVTEDEMKLILQMYRHETIDSRDTMEAREAEYRAWAHVQRLKSSLDEHNLELRVKTAIESEGRSMQKLAAAEAEIADMRHILDDSKREMSKLSNVLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKTDSLIMKKQLMEQEIQQSNVSLNLYDTKAARIEEQIQKLADNKSQSSVGLENAQRRLSDIRTSSQQVRDTVVEVQSKITSSRVTCMELEVELDKERFDKKKVEEDLEVARRNLSRLKAQDEDSSVTDKLQQELGEYREIVKCSICRDRTKEVVITKCYHLFCNSCIQKVAGSRQRKCPQCGACFGANDVKPVYL 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00928 870 Coils Coil 85 105 - -
Trre13g00928 870 PANTHER RING FINGER PROTEIN-RELATED 1 870 IPR013956 GO:0004842|GO:0010390
Trre13g00928 870 Pfam Zinc finger, C3HC4 type (RING finger) 818 856 IPR018957 GO:0046872
Trre13g00928 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 870 IPR013083 -
Trre13g00928 870 CDD RING-HC_Bre1-like 811 868 - -
Trre13g00928 870 Coils Coil 295 315 - -
Trre13g00928 870 Coils Coil 39 73 - -
Trre13g00928 870 MobiDBLite consensus disorder prediction 99 121 - -
Trre13g00928 870 MobiDBLite consensus disorder prediction 1 24 - -
Trre13g00928 870 SUPERFAMILY RING/U-box 810 869 - -
Trre13g00928 870 Coils Coil 698 718 - -
Trre13g00928 870 ProSiteProfiles Zinc finger RING-type profile. 818 856 IPR001841 -
Trre13g00928 870 Coils Coil 593 634 - -
Trre13g00928 870 Coils Coil 415 442 - -
Trre13g00928 870 SMART ring_2 818 856 IPR001841 -
Trre13g00928 870 ProSitePatterns Zinc finger RING-type signature. 833 842 IPR017907 -
Trre13g00928 870 Coils Coil 241 278 - -
Trre13g00928 870 Coils Coil 761 795 - -
Trre13g00928 870 Coils Coil 726 746 - -
Trre13g00928 870 Coils Coil 356 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00928 Trre-Chr13 7589701 7606740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00928 774 869 C3H Transcription Factor Family AT2G42030 30.928 2.12e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00928 K10696 - gmx:100790337 1269.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00928 13 7589701 7606740 Trre13g00928 13 7589701 7606740 ECH