Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00927 ATGGGGAGTATGGGTGAACATGATAGAAAACGGCGTTTTAGCTCTTTGTCACCTACACCTGCAACTGCCAAGAAGTTACCCTTTTTGCCAGTTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTATCAAAATCAAAAGCTCACACAGAAATTAGAGACTCAGAAGTTAGAATATACAGCTCTTGAGAATAAATTTTCTCAACTGAAGGAGAGGCAACAGTCGTATGATTCTACCTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTAGAGTCACGTTCTGAACGCACAAGGGAATCTAGCTGCAAAGCAGATTCCAGATATGCATCAAACACAAATGATGGTACTTCGTCTACTGTTCAAGATGTTTTTCTTAGTCGACTTTTGCAAACTGGTGCAACTGAAAGTTCCTCCTCTTATCACTTTGCAAACGAGATGGAACAACATAGAGAAATCACTTCTGAAAAAGTTAAAAGGATTTTGAATAATATATTGACATCTAGTAGTAACTCTCATTGTCTGAAAGATGGATTTCATACTGCACTACTGCAAAAGCTTCGAGAAGATGTTTCATGTGGGCAGATGTTATCTAATGATCTGGAGTTGGAAAGTAAAAACTTGAGATTGTCATTAAGTGAACTTCACTTAAAGCACAAGTCATTAGCAAGTGAATTCCGAATTCAGAGGGATCTGGATGCCAAAAATAAAGCTGAGCTTAAACGATTAAAAGGGGAACTGGAAAGCACAGTTGCAGAGTTAGAAGAAATCAATCACAACCTTGCAACTCTTAAGGTAGAGAAAGATGCAGCCAAAGGGGCAATTCTCCCAGTATTAGCTGTTGGGAATACACATATTCCTAATGATAAGATCAAAGACAAACAAAAGGATTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCGAGCTTCAACACGATTAGTGGAACTGAAACGTCTTCACGAGGAAAGAATAAGATTATTACAGCAATTGTGCGATATACAGAACACAGTGAAGAATTTGAAGTGTATTACATCTTCCCATGCATTCCAATTGGTTAGAGATCAGATAGAAAAATCAAAATCTGAAGTGCAGGAGTATCAGGCATTATATGAGAAACTACAGGCTGAGAAGGATAATCTTGCATGGAAGGAAAGGGAGTGGTACATTAAAAATGATTTAGCTGATCTTTTTCAAAGATCTGCGACAGTTTCTGATCTTAGAGTGGCTGATATACGCACTGAGATACAGAAAGCGATAGAGCAAAGAAATGTGATTGAAAATAGGCTGAAAGAGGAAGCAAGAGAACCAGGAAGGAAAGAAATTATTGCCGAATTTAAATCTCTGCTTTCTTCGTTTCCTGAGGAAATGGGATCCATGCAAAGTCAACTTACTAAATGTAAAGAATCAGCTTCAGATCTCCATTCTTTGCGTGCAGATGTGCATTCAATTTCCAGTATCCTTGATCAGAAGGTAAAAGAATGTGATGCATTATCGGTTAGGTCTGCAGGTCAACTTGCTGAGATAAACAGACTGCTTGCGGTGGTTCAAGATTTGCGAGTGACCGAGGATGAGATGAAGTTGATACTGCAAATGTATAGACACGAGACCATTGATTCAAGGGATACCATGGAAGCAAGGGAAGCAGAATACAGAGCATGGGCGCATGTTCAAAGGTTGAAATCATCTCTTGATGAGCACAATTTAGAACTTCGAGTTAAAACAGCAATTGAATCAGAAGGCAGATCAATGCAAAAACTTGCTGCGGCTGAAGCTGAGATTGCAGACATGAGACATATATTAGATGATTCTAAAAGGGAGATGTCTAAATTGTCTAATGTCTTGAGATCTAAAAATGAAGAAAATGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACCCAAAACCAACATCTGTTGCATCAGATTACTGAGAGAGATGATTATAATATTAAGCTTGTTTTAGAAGGGGTAAGGGCTAGACAAAAAACCGATTCTTTGATCATGAAGAAGCAATTAATGGAACAAGAGATCCAGCAATCAAATGTATCTCTGAATTTATATGATACGAAAGCTGCCAGAATTGAAGAACAGCTGAGGTTTTGCTCTGATCAGATTCAAAAACTTGCGGACAATAAATCTCAAAGTTCTGTCGGTTTGGAAAATGCACAAAGAAGGTTGTCGGATATCAGAACATCATCGCAACAAGTTAGGGATACAGTGGTGGAAGTGCAATCTAAAATTACAAGTAGTCGGGTGACTTGTATGGAGTTAGAAGTAGAACTCGATAAAGAAAGGTTTGACAAAAAAAAAGTAGAAGAAGATCTGGAGGTTGCTAGGAGAAACTTGTCACGTCTTAAAGCACAAGACGAGGACTCCTCAGTAACTGATAAGCTTCAACAGGAACTGGGAGAGTACAGGGAAATTGTCAAATGCAGTATCTGTCGAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAACTCATGTATCCAGAAAGTTGCTGGGAGTCGACAGCGCAAATGTCCACAATGTGGTGCATGCTTTGGGGCTAATGATGTTAAGCCAGTTTATTTGTAA 2634 0.3872 MGSMGEHDRKRRFSSLSPTPATAKKLPFLPVSEDKKLDIAVLQYQNQKLTQKLETQKLEYTALENKFSQLKERQQSYDSTLAVVKKSWEQLVNDLESRSERTRESSCKADSRYASNTNDGTSSTVQDVFLSRLLQTGATESSSSYHFANEMEQHREITSEKVKRILNNILTSSSNSHCLKDGFHTALLQKLREDVSCGQMLSNDLELESKNLRLSLSELHLKHKSLASEFRIQRDLDAKNKAELKRLKGELESTVAELEEINHNLATLKVEKDAAKGAILPVLAVGNTHIPNDKIKDKQKDLQDMESTLKELLDRASTRLVELKRLHEERIRLLQQLCDIQNTVKNLKCITSSHAFQLVRDQIEKSKSEVQEYQALYEKLQAEKDNLAWKEREWYIKNDLADLFQRSATVSDLRVADIRTEIQKAIEQRNVIENRLKEEAREPGRKEIIAEFKSLLSSFPEEMGSMQSQLTKCKESASDLHSLRADVHSISSILDQKVKECDALSVRSAGQLAEINRLLAVVQDLRVTEDEMKLILQMYRHETIDSRDTMEAREAEYRAWAHVQRLKSSLDEHNLELRVKTAIESEGRSMQKLAAAEAEIADMRHILDDSKREMSKLSNVLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKTDSLIMKKQLMEQEIQQSNVSLNLYDTKAARIEEQLRFCSDQIQKLADNKSQSSVGLENAQRRLSDIRTSSQQVRDTVVEVQSKITSSRVTCMELEVELDKERFDKKKVEEDLEVARRNLSRLKAQDEDSSVTDKLQQELGEYREIVKCSICRDRTKEVVITKCYHLFCNSCIQKVAGSRQRKCPQCGACFGANDVKPVYL 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00927 877 Coils Coil 85 105 - -
Trre13g00927 877 Coils Coil 768 802 - -
Trre13g00927 877 Coils Coil 733 753 - -
Trre13g00927 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 877 IPR013083 -
Trre13g00927 877 PANTHER RING FINGER PROTEIN-RELATED 1 877 IPR013956 GO:0004842|GO:0010390
Trre13g00927 877 Coils Coil 295 315 - -
Trre13g00927 877 Coils Coil 705 725 - -
Trre13g00927 877 Coils Coil 39 73 - -
Trre13g00927 877 ProSitePatterns Zinc finger RING-type signature. 840 849 IPR017907 -
Trre13g00927 877 MobiDBLite consensus disorder prediction 99 121 - -
Trre13g00927 877 MobiDBLite consensus disorder prediction 1 24 - -
Trre13g00927 877 CDD RING-HC_Bre1-like 818 875 - -
Trre13g00927 877 Coils Coil 593 634 - -
Trre13g00927 877 ProSiteProfiles Zinc finger RING-type profile. 825 863 IPR001841 -
Trre13g00927 877 Coils Coil 415 442 - -
Trre13g00927 877 Pfam Zinc finger, C3HC4 type (RING finger) 825 863 IPR018957 GO:0046872
Trre13g00927 877 SUPERFAMILY RING/U-box 817 876 - -
Trre13g00927 877 Coils Coil 241 278 - -
Trre13g00927 877 SMART ring_2 825 863 IPR001841 -
Trre13g00927 877 Coils Coil 356 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00927 Trre-Chr13 7589701 7606740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00927 781 876 C3H Transcription Factor Family AT2G42030 30.928 2.40e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00927 K10696 - gmx:100790337 1288.48