Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00922 ATGTCACAAACTTCTCAAACTAGAGAAGCAAGTGCTTTGTTGAAGTGGAAAACAACTCTTGACAACCAAAGTCAAACCTTACTATCTTCATGGAGTGGCAATAACTCATGCAACAACTGGCTTGGAATTACTTGTGATGAAAATTCCATATATGTTACTAATGTAAATCTCACAAATATGAGATTGAAAGGTACTCTCAAAAGTCTTAACTTCACATCACTTCCAAACATTCTTACTCTTGATCTTAGTTTCAACTTCTTAAATGGAAATATTCCTAACCCTATTGGAATGTTGTCCAAACTTTCTTATCTTGATCTTCGTGGCAATCTTCTCTCAGGAACAATTCCAACTTCTATTGAGAATCTAACCTTGTTGTCACATTTGAATCTAGATGACAACAACCTTTATGGCAACATTCCAAAAGCACTTTGGAATTTGAGCAACTTAAACTACTTAACATTTAGATTAAATAAATTTAATGGTTCTATTTTTGCTCAAGAAATTGTGAACTTGCATAAGCTAGAGACTCTAGATCTTGGTGGTAATGGACTTTCCATTAATGGTCCTATCCTCCAAGAACTTTGGAAGTTAGAAAATTTAACATATCTTTCTTTTTATCAATGCAATGTCAAAGGGTCTATTCCATTTTCTATAGGAAAGTTGACTAAGTTATCATATCTAAATTTAGCACATAACCATATTTTTGGTCATATCCCTATAGAAATTGGGAAGTTAAGGAAGTTAGAATATCTATATATTTTTGACAATAACTTATCTGGCAAGATTCCTTTAGAAATTGGGGGATTAGTGAACATGAAAGAGTTAAGGTTGAGTGACAATAATCTTTCTGGTTCGATTCCTCGTGAAATCGGAATGATGAGATTTGCGGTTCAACTTGATTTAAACAATAACTCTCTCTCAGGTAAAATCCCACCTACAATTGGAAACTTGAGTAGTATGCAACAACTTTCATTTGCTATAAACTATCTCAATGAAAAACTTCCAATGGAAATGAATATGCTTGTCAGTTTGGTTAACCTACAAATTTATGATAATGACTTCATTGGTCAGTTGCCTCACAACATTTGTATTGGTGGAAACTTGAAATTTTTGTCTATTAGGAATAACCATTTCACTGGCACAGTTCCAAAGAGTTTGAAGAATTGTACTAGCATTATAAGACTTAGGCTTGACCAAAATCAACTGAATGGAAATATAACAGAAGATTTTGGTATTTATCCAAATTTGAATTACATAAATTTAGGTGAAAACAATTTTTATGGACACCTTTCATCTAATTGGGGAAAGTGTCCTAACCTGACAAGCCTCATTATTTCTAATAATAATATAACAGGCGATATACCAGTAGAAATAGGTGAGGCACACAACTTGTATACTCTTGACTTATCTTCGAACAAACTTGAAGGAAAAATTCCAAAGGAGTTAAGCAACTTGACTTTTTTGACAAACCTACTGATAAGAAACAACCATCTTTCAGGAAACATTCCTGTGCAAATAGCATCCTTAGATGAACTTGATACCTTAGACTTTGCAGGAAATAATCTAAGTGGCTTCATCACAAAAGAACTTGCAAATTTGCCCAAGTTATGGAACTTAAATTTGAGCCATAACAAATTCATTGGAAATATTCCTGTTGAATTTGGACGATTTAAAGTCCTTCGAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAACAATACCACCAATGCTTACAGAGTTGAAATACTTGGAAACATTGAATCTTGCACATAATAACCTTTCTGGCCTTATTCCTTCTGGCTTTGATCAAATGTTCAGCTTGTCGTCCATTGATATATCATATAACCAATTTGAGGGTCCACTTCCCGACATTCGAGTTTTCAATGATGCTACAATTGAAATGTTGAGAAATAATAAAGGCTTGTGTGGTAATGTATCTGGCTTGGAGCCATGCCGAACACCAAGAGGCAAATCTCGTGATAAAAAAAATAAAAAATTGATCATAGCTTTGCCCCTTGCATTAGGAGGGACTCTAATGCTAGCATTAGCTTGTTTGAAATTGTCATATTATCTCTACTACCAAACATCAACCATAGGAGAAAATCAGATAGGAGGGAACATCATTGTACCTCAAAATATTTTCACAGTATGGAATTTTGATGGAAAAATGGTTTATGAGAACATCGTGGAAGCCACAGAAGAGTTTGATGACAAATATCTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCAAATTTGCACACAGGTCAAGTTGTTGCAGTGAAAAAGCTCCATTCAGTTGCAAATGAAGAAAATTTAAATAAATCATTCACAAATGAGATTCAAGCTTTGACTTCAATTCAACATCGAAACATTGTCAAGTTATATGGATTTTGCTCACATTCACGTTTATCATTTTTGGTTTATGAGTTCATCGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGACGATGAAGAAGCGATTGCATTTGATTGGAATACGAGGGTAAATGTCATTAAAGACGTAGCTAATGCTTTATGCTACATGCACCATGATTGCTCACCTCCAATTGTTCATCGAGATATATCGAGCAAAAATATTCTCCTAGATTTCGAATGTGTGGCTCATGTATCTGACTTTGGAACTGCTAAGCTTCTTAATTTTAATTCAACCAATTCCACCTCATTTGCATACACATTTGGATATGCTGCTCCAGAACTTGCATACACAACAAAAGTAACTGAGAAATGTGATGTGTATAGTTTTGGGATATTAGCATTGGAAATACTATTTGGAAGACATCCAGGAGATGTTACACCTTTATGGACCATTGTTAGGTCTTCTACAGTTGATGATGATACTATGCCACTGATCTATAAGTTGGATCAACGTCTTCCTCCTCCTGTGGATCCCATTGTCAAGAAGTTAGTATCGATTGCAATGATAGCTTTTGAATGTTTGATTGAAAATCCGCAATCTCGTCCTACCATGGAGCAGGTTTCCAAGAACCTTGTAATGTTAAAGTGA 3033 0.3462 MSQTSQTREASALLKWKTTLDNQSQTLLSSWSGNNSCNNWLGITCDENSIYVTNVNLTNMRLKGTLKSLNFTSLPNILTLDLSFNFLNGNIPNPIGMLSKLSYLDLRGNLLSGTIPTSIENLTLLSHLNLDDNNLYGNIPKALWNLSNLNYLTFRLNKFNGSIFAQEIVNLHKLETLDLGGNGLSINGPILQELWKLENLTYLSFYQCNVKGSIPFSIGKLTKLSYLNLAHNHIFGHIPIEIGKLRKLEYLYIFDNNLSGKIPLEIGGLVNMKELRLSDNNLSGSIPREIGMMRFAVQLDLNNNSLSGKIPPTIGNLSSMQQLSFAINYLNEKLPMEMNMLVSLVNLQIYDNDFIGQLPHNICIGGNLKFLSIRNNHFTGTVPKSLKNCTSIIRLRLDQNQLNGNITEDFGIYPNLNYINLGENNFYGHLSSNWGKCPNLTSLIISNNNITGDIPVEIGEAHNLYTLDLSSNKLEGKIPKELSNLTFLTNLLIRNNHLSGNIPVQIASLDELDTLDFAGNNLSGFITKELANLPKLWNLNLSHNKFIGNIPVEFGRFKVLRSLDLSGNFLDGTIPPMLTELKYLETLNLAHNNLSGLIPSGFDQMFSLSSIDISYNQFEGPLPDIRVFNDATIEMLRNNKGLCGNVSGLEPCRTPRGKSRDKKNKKLIIALPLALGGTLMLALACLKLSYYLYYQTSTIGENQIGGNIIVPQNIFTVWNFDGKMVYENIVEATEEFDDKYLIGVGGQGSVYKANLHTGQVVAVKKLHSVANEENLNKSFTNEIQALTSIQHRNIVKLYGFCSHSRLSFLVYEFIEKGSLEKILKDDEEAIAFDWNTRVNVIKDVANALCYMHHDCSPPIVHRDISSKNILLDFECVAHVSDFGTAKLLNFNSTNSTSFAYTFGYAAPELAYTTKVTEKCDVYSFGILALEILFGRHPGDVTPLWTIVRSSTVDDDTMPLIYKLDQRLPPPVDPIVKKLVSIAMIAFECLIENPQSRPTMEQVSKNLVMLK 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00922 1010 ProSiteProfiles Protein kinase domain profile. 736 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00922 1010 Gene3D Transferase(Phosphotransferase) domain 1 814 1010 - -
Trre13g00922 1010 Gene3D Phosphorylase Kinase; domain 1 710 813 - -
Trre13g00922 1010 FunFam Leucine-rich receptor-like protein kinase family protein 214 310 - -
Trre13g00922 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 342 656 - -
Trre13g00922 1010 Gene3D Ribonuclease Inhibitor 173 242 IPR032675 -
Trre13g00922 1010 ProSitePatterns Tyrosine protein kinases specific active-site signature. 859 871 IPR008266 GO:0004672|GO:0006468
Trre13g00922 1010 Gene3D Ribonuclease Inhibitor 329 654 IPR032675 -
Trre13g00922 1010 Pfam Leucine Rich Repeat 367 389 IPR001611 GO:0005515
Trre13g00922 1010 SMART LRR_typ_2 221 245 IPR003591 -
Trre13g00922 1010 SMART LRR_typ_2 581 604 IPR003591 -
Trre13g00922 1010 SMART LRR_typ_2 122 146 IPR003591 -
Trre13g00922 1010 SMART LRR_typ_2 533 557 IPR003591 -
Trre13g00922 1010 SMART LRR_typ_2 98 121 IPR003591 -
Trre13g00922 1010 SMART LRR_typ_2 269 293 IPR003591 -
Trre13g00922 1010 SMART LRR_typ_2 171 197 IPR003591 -
Trre13g00922 1010 SMART LRR_sd22_2 171 202 - -
Trre13g00922 1010 SMART LRR_sd22_2 461 487 - -
Trre13g00922 1010 SMART LRR_sd22_2 557 586 - -
Trre13g00922 1010 SMART LRR_sd22_2 509 535 - -
Trre13g00922 1010 SMART LRR_sd22_2 98 124 - -
Trre13g00922 1010 Pfam Leucine rich repeat N-terminal domain 9 46 IPR013210 -
Trre13g00922 1010 ProSiteProfiles Leucine-rich repeat profile. 463 486 IPR001611 GO:0005515
Trre13g00922 1010 Gene3D Ribonuclease Inhibitor 243 328 IPR032675 -
Trre13g00922 1010 SUPERFAMILY Protein kinase-like (PK-like) 721 1006 IPR011009 -
Trre13g00922 1010 SUPERFAMILY L domain-like 31 353 - -
Trre13g00922 1010 Pfam Leucine rich repeat 560 618 IPR001611 GO:0005515
Trre13g00922 1010 Pfam Leucine rich repeat 438 498 IPR001611 GO:0005515
Trre13g00922 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 247 1007 - -
Trre13g00922 1010 Pfam Protein kinase domain 738 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00922 1010 Gene3D Ribonuclease Inhibitor 6 167 IPR032675 -
Trre13g00922 1010 FunFam MDIS1-interacting receptor like kinase 2 814 1010 - -
Trre13g00922 1010 FunFam Nuclear pore complex protein NUP107 6 165 - -
Trre13g00922 1010 FunFam Leucine-rich repeat receptor protein kinase MSP1 702 813 - -
Trre13g00922 1010 SUPERFAMILY RNI-like 299 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00922 Trre-Chr13 7554296 7557440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00922 4 907 Receptor kinase-like Gene Family AT4G08850 42.810 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00922 Pkinase 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00922 - - tpra:123888271 1192.56