Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00921 ATGGTGTTCTTATTTTCAAACCTTCATTCCTTGAAGCTATTACCCTTTTGGTTGCTTCTTTCAATGTGGTTTTGTTCATTCACAATGTCACAAACTTCTCAAACTAGAGAAGCAAGTGCTTTGTTGAAGTGGAAAACAACTCTTGACAACCAAAGTCAAACCTTACTATCTTCATGGAGTGGCAATAACTCATGCAACAACTGGCTTGGAATTACTTGTGATGAAAATTCCATATATGTTACTAATGTAAATCTCACAAATATGAGATTGAAAGGTACTCTCAAAAGTCTTAACTTCACATCACTTCCAAACATTCTTACTCTTGATCTTAGTTTCAACTTCTTAAATGGAAATATTCCTAACCCTATTGGAATGTTGTCCAAACTTTCTTATCTTGATCTTCGTGGCAATCTTCTCTCAGGAACAATTCCAACTTCTATTGAGAATCTAACCTTGTTGTCACATTTGAATCTAGATGACAACAACCTTTATGGCAACATTCCAAAAGCACTTTGGAATTTGAGCAACTTAAACTACTTAACATTTAGATTAAATAAATTTAATGGTTCTATTTTTGCTCAAGAAATTGTGAACTTGCATAAGCTAGAGACTCTAGATCTTGGTGGTAATGGACTTTCCATTAATGGTCCTATCCTCCAAGAACTTTGGAAGTTAGAAAATTTAACATATCTTTCTTTTTATCAATGCAATGTCAAAGGGTCTATTCCATTTTCTATAGGAAAGTTGACTAAGTTATCATATCTAAATTTAGCACATAACCATATTTTTGGTCATATCCCTATAGAAATTGGGAAGTTAAGGAAGTTAGAATATCTATATATTTTTGACAATAACTTATCTGGCAAGATTCCTTTAGAAATTGGGGGATTAGTGAACATGAAAGAGTTAAGGTTGAGTGACAATAATCTTTCTGGTTCGATTCCTCGTGAAATCGGAATGATGAGATTTGCGGTTCAACTTGATTTAAACAATAACTCTCTCTCAGGTAAAATCCCACCTACAATTGGAAACTTGAGTAGTATGCAACAACTTTCATTTGCTATAAACTATCTCAATGAAAAACTTCCAATGGAAATGAATATGCTTGTCAGTTTGGTTAACCTACAAATTTATGATAATGACTTCATTGGTCAGTTGCCTCACAACATTTGTATTGGTGGAAACTTGAAATTTTTGTCTATTAGGAATAACCATTTCACTGGCACAGTTCCAAAGAGTTTGAAGAATTGTACTAGCATTATAAGACTTAGGCTTGACCAAAATCAACTGAATGGAAATATAACAGAAGATTTTGGTATTTATCCAAATTTGAATTACATAAATTTAGGTGAAAACAATTTTTATGGACACCTTTCATCTAATTGGGGAAAGTGTCCTAACCTGACAAGCCTCATTATTTCTAATAATAATATAACAGGCGATATACCAGTAGAAATAGGTGAGGCACACAACTTGTATACTCTTGACTTATCTTCGAACAAACTTGAAGGAAAAATTCCAAAGGAGTTAAGCAACTTGACTTTTTTGACAAACCTACTGATAAGAAACAACCATCTTTCAGGAAACATTCCTGTGCAAATAGCATCCTTAGATGAACTTGATACCTTAGACTTTGCAGGAAATAATCTAAGTGGCTTCATCACAAAAGAACTTGCAAATTTGCCCAAGTTATGGAACTTAAATTTGAGCCATAACAAATTCATTGGAAATATTCCTGTTGAATTTGGACGATTTAAAGTCCTTCGAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAACAATACCACCAATGCTTACAGAGTTGAAATACTTGGAAACATTGAATCTTGCACATAATAACCTTTCTGGCCTTATTCCTTCTGGCTTTGATCAAATGTTCAGCTTGTCGTCCATTGATATATCATATAACCAATTTGAGGGTCCACTTCCCGACATTCGAGTTTTCAATGATGCTACAATTGAAATGTTGAGAAATAATAAAGGCTTGTGTGGTAATGTATCTGGCTTGGAGCCATGCCGAACACCAAGAGGCAAATCTCGTGATAAAAAAAATAAAAAATTGATCATAGCTTTGCCCCTTGCATTAGGAGGGACTCTAATGCTAGCATTAGCTTGTTTGAAATTGTCATATTATCTCTACTACCAAACATCAACCATAGGAGAAAATCAGATAGGAGGGAACATCATTGTACCTCAAAATATTTTCACAGTATGGAATTTTGATGGAAAAATGGTTTATGAGAACATCGTGGAAGCCACAGAAGAGTTTGATGACAAATATCTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCAAATTTGCACACAGGTCAAGTTGTTGCAGTGAAAAAGCTCCATTCAGTTGCAAATGAAGAAAATTTAAATAAATCATTCACAAATGAGATTCAAGCTTTGACTTCAATTCAACATCGAAACATTGTCAAGTTATATGGATTTTGCTCACATTCACGTTTATCATTTTTGGTTTATGAGTTCATCGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGACGATGAAGAAGCGATTGCATTTGATTGGAATACGAGGGTAAATGTCATTAAAGACGTAGCTAATGCTTTATGCTACATGCACCATGATTGCTCACCTCCAATTGTTCATCGAGATATATCGAGCAAAAATATTCTCCTAGATTTCGAATGTGTGGCTCATGTATCTGACTTTGGAACTGCTAAGCTTCTTAATTTTAATTCAACCAATTCCACCTCATTTGCATACACATTTGGATATGCTGCTCCAGAACTTGCATACACAACAAAAGTAACTGAGAAATGTGATGTGTATAGTTTTGGGATATTAGCATTGGAAATACTATTTGGAAGACATCCAGGAGATGTTACACCTTTATGGACCATTGTTAGGTCTTCTACAGTTGATGATGATACTATGCCACTGATCTATAAGTTGGATCAACGTCTTCCTCCTCCTGTGGATCCCATTGTCAAGAAGTTAGTATCGATTGCAATGATAGCTTTTGAATGTTTGATTGAAAATCCGCAATCTCGTCCTACCATGGAGCAGGTTTCCAAGAACCTTGTAATGTTAAAGTGA 3117 0.3462 MVFLFSNLHSLKLLPFWLLLSMWFCSFTMSQTSQTREASALLKWKTTLDNQSQTLLSSWSGNNSCNNWLGITCDENSIYVTNVNLTNMRLKGTLKSLNFTSLPNILTLDLSFNFLNGNIPNPIGMLSKLSYLDLRGNLLSGTIPTSIENLTLLSHLNLDDNNLYGNIPKALWNLSNLNYLTFRLNKFNGSIFAQEIVNLHKLETLDLGGNGLSINGPILQELWKLENLTYLSFYQCNVKGSIPFSIGKLTKLSYLNLAHNHIFGHIPIEIGKLRKLEYLYIFDNNLSGKIPLEIGGLVNMKELRLSDNNLSGSIPREIGMMRFAVQLDLNNNSLSGKIPPTIGNLSSMQQLSFAINYLNEKLPMEMNMLVSLVNLQIYDNDFIGQLPHNICIGGNLKFLSIRNNHFTGTVPKSLKNCTSIIRLRLDQNQLNGNITEDFGIYPNLNYINLGENNFYGHLSSNWGKCPNLTSLIISNNNITGDIPVEIGEAHNLYTLDLSSNKLEGKIPKELSNLTFLTNLLIRNNHLSGNIPVQIASLDELDTLDFAGNNLSGFITKELANLPKLWNLNLSHNKFIGNIPVEFGRFKVLRSLDLSGNFLDGTIPPMLTELKYLETLNLAHNNLSGLIPSGFDQMFSLSSIDISYNQFEGPLPDIRVFNDATIEMLRNNKGLCGNVSGLEPCRTPRGKSRDKKNKKLIIALPLALGGTLMLALACLKLSYYLYYQTSTIGENQIGGNIIVPQNIFTVWNFDGKMVYENIVEATEEFDDKYLIGVGGQGSVYKANLHTGQVVAVKKLHSVANEENLNKSFTNEIQALTSIQHRNIVKLYGFCSHSRLSFLVYEFIEKGSLEKILKDDEEAIAFDWNTRVNVIKDVANALCYMHHDCSPPIVHRDISSKNILLDFECVAHVSDFGTAKLLNFNSTNSTSFAYTFGYAAPELAYTTKVTEKCDVYSFGILALEILFGRHPGDVTPLWTIVRSSTVDDDTMPLIYKLDQRLPPPVDPIVKKLVSIAMIAFECLIENPQSRPTMEQVSKNLVMLK 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00921 1038 SUPERFAMILY Protein kinase-like (PK-like) 749 1034 IPR011009 -
Trre13g00921 1038 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 370 684 - -
Trre13g00921 1038 FunFam Nuclear pore complex protein NUP107 34 193 - -
Trre13g00921 1038 SMART LRR_sd22_2 537 563 - -
Trre13g00921 1038 SMART LRR_sd22_2 126 152 - -
Trre13g00921 1038 SMART LRR_sd22_2 199 230 - -
Trre13g00921 1038 SMART LRR_sd22_2 585 614 - -
Trre13g00921 1038 SMART LRR_sd22_2 489 515 - -
Trre13g00921 1038 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Trre13g00921 1038 FunFam Leucine-rich repeat receptor protein kinase MSP1 730 841 - -
Trre13g00921 1038 PANTHER LEUCINE RICH REPEAT KINASE 2 324 1037 - -
Trre13g00921 1038 ProSitePatterns Tyrosine protein kinases specific active-site signature. 887 899 IPR008266 GO:0004672|GO:0006468
Trre13g00921 1038 Gene3D Ribonuclease Inhibitor 273 353 IPR032675 -
Trre13g00921 1038 Gene3D Ribonuclease Inhibitor 195 272 IPR032675 -
Trre13g00921 1038 Pfam Protein kinase domain 766 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00921 1038 Pfam Leucine Rich Repeat 395 417 IPR001611 GO:0005515
Trre13g00921 1038 Pfam Leucine rich repeat 466 526 IPR001611 GO:0005515
Trre13g00921 1038 Pfam Leucine rich repeat 588 646 IPR001611 GO:0005515
Trre13g00921 1038 Gene3D Phosphorylase Kinase; domain 1 738 841 - -
Trre13g00921 1038 Gene3D Ribonuclease Inhibitor 34 194 IPR032675 -
Trre13g00921 1038 ProSiteProfiles Leucine-rich repeat profile. 491 514 IPR001611 GO:0005515
Trre13g00921 1038 FunFam MDIS1-interacting receptor like kinase 2 842 1038 - -
Trre13g00921 1038 ProSiteProfiles Protein kinase domain profile. 764 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00921 1038 FunFam Leucine-rich receptor-like protein kinase family protein 242 338 - -
Trre13g00921 1038 SUPERFAMILY RNI-like 327 648 - -
Trre13g00921 1038 Gene3D Ribonuclease Inhibitor 356 682 IPR032675 -
Trre13g00921 1038 Gene3D Transferase(Phosphotransferase) domain 1 842 1038 - -
Trre13g00921 1038 SUPERFAMILY L domain-like 59 381 - -
Trre13g00921 1038 SMART LRR_typ_2 150 174 IPR003591 -
Trre13g00921 1038 SMART LRR_typ_2 561 585 IPR003591 -
Trre13g00921 1038 SMART LRR_typ_2 297 321 IPR003591 -
Trre13g00921 1038 SMART LRR_typ_2 126 149 IPR003591 -
Trre13g00921 1038 SMART LRR_typ_2 199 225 IPR003591 -
Trre13g00921 1038 SMART LRR_typ_2 609 632 IPR003591 -
Trre13g00921 1038 SMART LRR_typ_2 249 273 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00921 Trre-Chr13 7554296 7557524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00921 25 935 Receptor kinase-like Gene Family AT4G08850 43.027 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00921 Pkinase 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00921 - - tpra:123888271 1199.88