Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00920 ATGGAATTGGATAACAATAATTTTTATGGCCACCTTTCATCCAACTGGGGAAAGTTTCATAACTTGACACAACTTCACATCTCCAAAACTAATATATCAGGTTGTATACCACCCGAACTCGGTCAAGCACCTAGCCTATACTCAATTGACTTATCTTCAAACAATCTTACAGGAAAAATTCCAAATGAGTTAAGCAACTTGACTTTGTTGTCAATTCTACAGATAAGCAACAACCATCTTTCAGGAAACATTCCTGTGCAAATAGCATCCTTAGATGGACTTGATACCTTAGACTTCGCAGGAAATAATCTAAGTGGCTTCATCACAAAAGAACTTGCAACTTTGCCCAAGTTATGGAACCTAAATTTGAGCCATAACAAATTCATAGGAAATATTCCTGTTGAATTCGGACAATTCAAAGTCCTTCGAAGTCTTGATCTTAGTGAAAATTTGTTGAATGCAACAATACCACCAATGCTTACCCGGTTGAAATACTTGGAAACATTGAATCTTGCACATAATAACCTTTCTGGCTTGATTCCTTCTGACTTTGATCAAATGTCCAGCTTGACGTTTGTTGATATATCATATAACCAGTTGGAGGGTCCACTCCCCAACATTCGAGTATTCAATAACGCTACAATTGAAGTGTTGAGAAATAACAAAGGATTGTGTGGTAATATTTATGGCTTAGAGTCCTGTCCAATGTCAAGAAGTGAATCTCACCATCATTCTCATAATCGTATTAAAAAAGTCTTGTTAATAGTTTTACCCCTTATAATTGTTGGAACCGTAATGCTAGCATTAATTTGCTATAAATTCACATATCATCTCTTCCAAACATCAACCACCAATGAAAACCAGGTTGGAGGAAACATTAATGTACTTCAAGATGTATTTTCAATATGGAACTTTGATGGAAAAATTGTGTATGAGAACATTGTGGAAGCCACAGAAGAGTTTGATGACAAATATCTCATTGGAGTTGGAGGACATGGAAGTGTATACAAAGCTAAGTTGCAGACAGGTCAAGTAGTTGCTGTGAAAAAGCTCCATTCAGTTGCAAATGGGGAAAATCTCAATCTAAAATCATTCACAAATGAGATCCAAGCTTTGACTGAAATTCGACATCGTAATGTTGTGAAACTTTATGGATTTTGCTCACATTCACAATTGTCATTTTTGGTTTATGAGTTCATAGAAAAAGGTAGTTTGGAAAAGATTTTGATAGATGATGAACAAGCAATTGCATTTGATTGGAATAAAAGGGTGAATGTCATTAAAGATGTAGCCAATGCTTTGTGCTATATGCACCATGATTGCTCACTTCCAATTGTTCACCGAGATATATCAAGCAAGAACATTCTTCTTGACAACGAATTTGTGGCTCGTGTCTCTGACTTTGGAACCGCTAAGCTTCTAAATCTTAATTTAACCGACTCAACGTCATTTGCATGCACATTTGGATATGCTGCTCCAGAACTTGCATACACAACAAGAGTGAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCGTTGGAAATACTTTTTGGAAAACATCCTGGAGATGTTGTATCTTTATGGACCGCCGTTGGCTCTATACCTGATCCGATGCTACTAATGGATAAGTTGGACCAACGTCCTCCTCATCCTTTGAATCCCATTATCGAGGAGTTAGTAACAATTGCAATGATAGCTTTAGCATGTTTGACTGAAAGTCATCAATATCGCCCTACTATGAAGCAGGTTTTGAAGGAGTTTGCAGGTTTTTAA 1779 0.3665 MELDNNNFYGHLSSNWGKFHNLTQLHISKTNISGCIPPELGQAPSLYSIDLSSNNLTGKIPNELSNLTLLSILQISNNHLSGNIPVQIASLDGLDTLDFAGNNLSGFITKELATLPKLWNLNLSHNKFIGNIPVEFGQFKVLRSLDLSENLLNATIPPMLTRLKYLETLNLAHNNLSGLIPSDFDQMSSLTFVDISYNQLEGPLPNIRVFNNATIEVLRNNKGLCGNIYGLESCPMSRSESHHHSHNRIKKVLLIVLPLIIVGTVMLALICYKFTYHLFQTSTTNENQVGGNINVLQDVFSIWNFDGKIVYENIVEATEEFDDKYLIGVGGHGSVYKAKLQTGQVVAVKKLHSVANGENLNLKSFTNEIQALTEIRHRNVVKLYGFCSHSQLSFLVYEFIEKGSLEKILIDDEQAIAFDWNKRVNVIKDVANALCYMHHDCSLPIVHRDISSKNILLDNEFVARVSDFGTAKLLNLNLTDSTSFACTFGYAAPELAYTTRVNEKCDVYSFGVLALEILFGKHPGDVVSLWTAVGSIPDPMLLMDKLDQRPPHPLNPIIEELVTIAMIALACLTESHQYRPTMKQVLKEFAGF 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00920 592 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Trre13g00920 592 Pfam Leucine rich repeat 70 128 IPR001611 GO:0005515
Trre13g00920 592 ProSiteProfiles Protein kinase domain profile. 321 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00920 592 Gene3D Ribonuclease Inhibitor 1 243 IPR032675 -
Trre13g00920 592 SUPERFAMILY Protein kinase-like (PK-like) 306 587 IPR011009 -
Trre13g00920 592 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Trre13g00920 592 Gene3D Transferase(Phosphotransferase) domain 1 400 592 - -
Trre13g00920 592 FunFam MDIS1-interacting receptor like kinase 2 400 591 - -
Trre13g00920 592 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 110 234 - -
Trre13g00920 592 SUPERFAMILY L domain-like 3 226 - -
Trre13g00920 592 Pfam Leucine Rich Repeat 46 67 IPR001611 GO:0005515
Trre13g00920 592 Pfam Protein kinase domain 323 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00920 592 PANTHER LEUCINE RICH REPEAT KINASE 2 1 589 - -
Trre13g00920 592 ProSitePatterns Tyrosine protein kinases specific active-site signature. 445 457 IPR008266 GO:0004672|GO:0006468
Trre13g00920 592 FunFam Leucine-rich repeat receptor protein kinase MSP1 284 399 - -
Trre13g00920 592 ProSitePatterns Protein kinases ATP-binding region signature. 327 350 IPR017441 GO:0005524
Trre13g00920 592 FunFam Piriformospora indica-insensitive protein 2 12 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00920 Trre-Chr13 7551905 7553809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00920 1 493 Receptor kinase-like Gene Family AT4G08850 45.600 4.01e-137 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00920 Pkinase 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00920 - - tpra:123888271 840.876