Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00919 ATGCTTGCTAATTTGAGTTCACTCTTTCTGCATGATAACAATTTTATTGGTGAGTTGCCTCATAACATTTGCTTTAGTGGAAACTTGAAATCCATTATTGCTTCAAATAACCATTTTACCGGGCAAGTCCTAAAGAGTCTGAAGAATTGTTCTAGTCTTACTAGACTTTGGCTTAAACATAACCATTTTTATGGAAACATAACAGATGATTTAGGTATATACCCAAATTTGAAGTTCATGGAATTGGATAACAATAATTTTTATGGCCACCTTTCATCCAACTGGGGAAAGTTTCATAACTTGACACAACTTCACATCTCCAAAACTAATATATCAGGTTGTATACCACCCGAACTCGGTCAAGCACCTAGCCTATACTCAATTGACTTATCTTCAAACAATCTTACAGGAAAAATTCCAAATGAGTTAAGCAACTTGACTTTGTTGTCAATTCTACAGATAAGCAACAACCATCTTTCAGGAAACATTCCTGTGCAAATAGCATCCTTAGATGGACTTGATACCTTAGACTTCGCAGGAAATAATCTAAGTGGCTTCATCACAAAAGAACTTGCAACTTTGCCCAAGTTATGGAACCTAAATTTGAGCCATAACAAATTCATAGGAAATATTCCTGTTGAATTCGGACAATTCAAAGTCCTTCGAAGTCTTGATCTTAGTGAAAATTTGTTGAATGCAACAATACCACCAATGCTTACCCGGTTGAAATACTTGGAAACATTGAATCTTGCACATAATAACCTTTCTGGCTTGATTCCTTCTGACTTTGATCAAATGTCCAGCTTGACGTTTGTTGATATATCATATAACCAGTTGGAGGGTCCACTCCCCAACATTCGAGTATTCAATAACGCTACAATTGAAGTGTTGAGAAATAACAAAGGATTGTGTGGTAATATTTATGGCTTAGAGTCCTGTCCAATGTCAAGAAGTGAATCTCACCATCATTCTCATAATCGTATTAAAAAAGTCTTGTTAATAGTTTTACCCCTTATAATTGTTGGAACCGTAATGCTAGCATTAATTTGCTATAAATTCACATATCATCTCTTCCAAACATCAACCACCAATGAAAACCAGGTTGGAGGAAACATTAATGTACTTCAAGATGTATTTTCAATATGGAACTTTGATGGAAAAATTGTGTATGAGAACATTGTGGAAGCCACAGAAGAGTTTGATGACAAATATCTCATTGGAGTTGGAGGACATGGAAGTGTATACAAAGCTAAGTTGCAGACAGGTCAAGTAGTTGCTGTGAAAAAGCTCCATTCAGTTGCAAATGGGGAAAATCTCAATCTAAAATCATTCACAAATGAGATCCAAGCTTTGACTGAAATTCGACATCGTAATGTTGTGAAACTTTATGGATTTTGCTCACATTCACAATTGTCATTTTTGGTTTATGAGTTCATAGAAAAAGGTAGTTTGGAAAAGATTTTGATAGATGATGAACAAGCAATTGCATTTGATTGGAATAAAAGGGTGAATGTCATTAAAGATGTAGCCAATGCTTTGTGCTATATGCACCATGATTGCTCACTTCCAATTGTTCACCGAGATATATCAAGCAAGAACATTCTTCTTGACAACGAATTTGTGGCTCGTGTCTCTGACTTTGGAACCGCTAAGCTTCTAAATCTTAATTTAACCGACTCAACGTCATTTGCATGCACATTTGGATATGCTGCTCCAGAACTTGCATACACAACAAGAGTGAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCGTTGGAAATACTTTTTGGAAAACATCCTGGAGATGTTGTATCTTTATGGACCGCCGTTGGCTCTATACCTGATCCGATGCTACTAATGGATAAGTTGGACCAACGTCCTCCTCATCCTTTGAATCCCATTATCGAGGAGTTAGTAACAATTGCAATGATAGCTTTAGCATGTTTGACTGAAAGTCATCAATATCGCCCTACTATGAAGCAGGTTTTGAAGGAGTTTGCAGGTTTTTAA 2016 0.3621 MLANLSSLFLHDNNFIGELPHNICFSGNLKSIIASNNHFTGQVLKSLKNCSSLTRLWLKHNHFYGNITDDLGIYPNLKFMELDNNNFYGHLSSNWGKFHNLTQLHISKTNISGCIPPELGQAPSLYSIDLSSNNLTGKIPNELSNLTLLSILQISNNHLSGNIPVQIASLDGLDTLDFAGNNLSGFITKELATLPKLWNLNLSHNKFIGNIPVEFGQFKVLRSLDLSENLLNATIPPMLTRLKYLETLNLAHNNLSGLIPSDFDQMSSLTFVDISYNQLEGPLPNIRVFNNATIEVLRNNKGLCGNIYGLESCPMSRSESHHHSHNRIKKVLLIVLPLIIVGTVMLALICYKFTYHLFQTSTTNENQVGGNINVLQDVFSIWNFDGKIVYENIVEATEEFDDKYLIGVGGHGSVYKAKLQTGQVVAVKKLHSVANGENLNLKSFTNEIQALTEIRHRNVVKLYGFCSHSQLSFLVYEFIEKGSLEKILIDDEQAIAFDWNKRVNVIKDVANALCYMHHDCSLPIVHRDISSKNILLDNEFVARVSDFGTAKLLNLNLTDSTSFACTFGYAAPELAYTTRVNEKCDVYSFGVLALEILFGKHPGDVVSLWTAVGSIPDPMLLMDKLDQRPPHPLNPIIEELVTIAMIALACLTESHQYRPTMKQVLKEFAGF 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00919 671 FunFam Leucine-rich repeat receptor protein kinase MSP1 363 478 - -
Trre13g00919 671 Gene3D Transferase(Phosphotransferase) domain 1 479 671 - -
Trre13g00919 671 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Trre13g00919 671 Pfam Protein kinase domain 402 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00919 671 ProSitePatterns Protein kinases ATP-binding region signature. 406 429 IPR017441 GO:0005524
Trre13g00919 671 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 2 317 - -
Trre13g00919 671 SUPERFAMILY L domain-like 2 318 - -
Trre13g00919 671 SUPERFAMILY Protein kinase-like (PK-like) 386 666 IPR011009 -
Trre13g00919 671 ProSiteProfiles Protein kinase domain profile. 400 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00919 671 PANTHER LEUCINE RICH REPEAT KINASE 2 2 668 - -
Trre13g00919 671 Gene3D Ribonuclease Inhibitor 1 316 IPR032675 -
Trre13g00919 671 FunFam MDIS1-interacting receptor like kinase 2 479 670 - -
Trre13g00919 671 Gene3D Phosphorylase Kinase; domain 1 363 478 - -
Trre13g00919 671 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
Trre13g00919 671 Pfam Leucine rich repeat 221 279 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00919 Trre-Chr13 7551668 7553809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00919 5 572 Receptor kinase-like Gene Family AT4G08850 45.739 1.46e-162 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00919 Pkinase 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00919 - - tpra:123888271 958.362