Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00918 ATGAAGTTGTTACCCTTTTGGCTGCTTCTATCAACTTGTTTTTGTGCATTTACAACAGCCACTTTACAAAGTAGAGAAGAAGCTAGTGCTTTATTGAAGTGGAAATCAAGTCTTGACAACCAAAGTCAAACCTTACTATCTTCATGGAGTGGCAATAATTCATGCAACTGGCTTGGAATTACATGTGATGAAGATTCCATATATGTTACTTATGTAAATCTCACAAACATGGGATTGAAAGGTACACTCAATAGTCTTAACTTTACATCACTTCCAAATATTCTTACTCTTGATCTTAGTTTCAACTTCTTGAATGAAAATATTCCTAACCATATTGGAATGTTGTCCAAACTTTCTCATCTTGATCTTAGTCACAATCTTCTCTTAGGAACAATTCCAACTTCTATTGAGAATCTGACCTTGTTGTCACATTTGAGTCTAGGAGGCAACAACCTTTATGGCAACATTCCAAAAGAACTTTGGAATTTGAGCAACTTAAACTACTTAACAGTTGAATTAAATAAGTTTAATGGTTTTGTTTTTGCTCAAGAAATTTTGAAGTTGCATAAGCTAGAGACTCTAGATCTTGGTGGTAATGGTCTTTCCATTGATGGTCTTATTCTCCAAGAAATTTGGAAGTTGGAAAATTTAGCATACCTTTCTTTTCAACTATGCAATGTCAAAGGGTCTATTCCATTTTCTATAGGAAAGTTGGCTAACTTGTCATATCTAAATTTAGCACACAACCATATATTTGGTCATATCCCTATAGAAATAGGGAAGTTGAGGAAGCTAGAATATTTATATTTTTTTGACAATAACTTATCTGGTAGCAATCCTGTGGAAATTGGGGGACTGGTGAACATTAAAGGGTTAAGGTTTAATGACAATAATCTTTCGGGTTCGATTCCTCGTGAAATCGGAATGATGAGAGTTGCAGTTCAAATTGATTTAAACAATAACTCTCTCTCAGGTGAAATTCCACCAACAATTGGAAACTTGAGTAATATGCAATCTCTTACATTTGCTATAAACTATCTCACTGGAAAACTTCCAATGGAAATGAATATGCTTGTCAGTTTGGTTACCCTACAAATTTATGATAATGACTTCATTGGTCAGTTGCCTCACAACATTTGTATTGGTGGAAACTTGAAATATTTGGCTGTTACGAATAACCATTTCACTGGCCCAGTTCGAAAGAGTTTGAAGAATTGTACTAGCATTATAAGACTTAGGCTTGAACAAAATCAACTGAATGGAAATATAACAGAAGATTTTGGTATTTATCCAAATTTGAATTTCATACATTTAGGTGAAAACAATTTTTATGGACACCTTTCATCTAATTGGGGAAAGTGTCCTAACCTGACAAGCCTCATCATTTCTAATAATAATATAACAGGCGATATACCAGTAGAAATAGGCGAGGCACGCAACTTGTATACTCTTGACTTATCTTCGAACAAACTCGAAGGAAAAATTCCAAAGGAGTTAGGCAACTTGACTTTTTTGACAAACCTACTGATAAGAAACAACCATCTTTCAGGAAACATTCCTGTGCAAATAGCATCCTTAGATGAACTTGATACCTTAGACTTTGCAGGAAATAATCTAAGTGGTTTCATCACAAAAGAACTTGCAATTTTGTCCAATTTATGGAACTTAAATTTGAGCCAAAACAAATTCATAGGAAATATTCCTGTTGAATTTGGACGATTTAAAGTCCTTCGAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAACAATACCACCAATGCTTACAGAGTTGAAATACTTGGAAACATTGAATCTCGCACATAATAACCTTTCTGGCCTTATTCCTTCTGGCTTTGATCAGATGTTTAGCTTGACGATTGTTGATATATCATATAACCAATTGGAGGGTCCACTCCCCAACATTCGAGCCTTCAATAACGCTACGATTGAATTGTTGAGAAATAACAAAGGTTTGTGTGGTAATGTTTATGGCTTAGAGTCTTGTCCAACATCAAGAAGTGAATCTCATCATCATTCTCATCATCATCTTAACAAAGTCCTGTTAATAGTTTTACCCCTTGTTGGAACCATAATACTAGCATTAATTTGCTTGAAATTCTCATATCATCTCTTCCATACATCAAACACCGAAGAAAATGTTGGAGGGGATGCCATTGTAGCTCAAAATGTATTTACAATATGGAACTTTGATGGAAAAATTGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTGATGACAAACATCTCATTGGATTTGGAGGGCATGGAAGGGTGTACAAAGATATTTTGCAGACAGGTCAAGTAGTTGCTGTGAAAAAACTACATTCAGTTGCAAATGGGGGAAATTCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTGACTGAAATTCGACATCGTAATGTTGTGAAACTGTATGGATTTTGCTCACATTCACAATTGGCATTTTCGGTTTATGAGTTCATAGAGAAAGGTAGTTTGGAAAAGATTTTGATAGATGATGAACAAGCAACTGCATTTGATTGGAATAAGAGGGTGAATGCCATTAAAGATGTAGCCAATGCTTTATGCTATATGCATCATGATTGCTCAGTTCCAATTGTTCATCGAGATATATCTAGCAAGAACATTCTATTGGATTTGGAATGTGTGGCTCATGTCTCTGACTTTGGAACAGCTAAGCTTTTAAATCTTAATTTAACCAACTCAACGTCATTTGCATGCACATTCGGATATGCTGCTCCAGAACTGGCATACACGTTGAGAGTGAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAACATCCTGGAGATATTGTATCTTTATGGACCGTCGTTGGCTCTATACCTGATGCAATGCTACTAATGGATAAGTTGGACCAACGTCTTCCTCATCCTTTCAATCCCATCATCGAGGAGTTAGTAAAGATTGCAATGATAGCTTTTCTATGTTTGACTGAAAGTCCTCAATCACGCCCTACCATGAAGCAGGTTTCGCTAGAGTTATCAGGATTGTAA 3075 0.3541 MKLLPFWLLLSTCFCAFTTATLQSREEASALLKWKSSLDNQSQTLLSSWSGNNSCNWLGITCDEDSIYVTYVNLTNMGLKGTLNSLNFTSLPNILTLDLSFNFLNENIPNHIGMLSKLSHLDLSHNLLLGTIPTSIENLTLLSHLSLGGNNLYGNIPKELWNLSNLNYLTVELNKFNGFVFAQEILKLHKLETLDLGGNGLSIDGLILQEIWKLENLAYLSFQLCNVKGSIPFSIGKLANLSYLNLAHNHIFGHIPIEIGKLRKLEYLYFFDNNLSGSNPVEIGGLVNIKGLRFNDNNLSGSIPREIGMMRVAVQIDLNNNSLSGEIPPTIGNLSNMQSLTFAINYLTGKLPMEMNMLVSLVTLQIYDNDFIGQLPHNICIGGNLKYLAVTNNHFTGPVRKSLKNCTSIIRLRLEQNQLNGNITEDFGIYPNLNFIHLGENNFYGHLSSNWGKCPNLTSLIISNNNITGDIPVEIGEARNLYTLDLSSNKLEGKIPKELGNLTFLTNLLIRNNHLSGNIPVQIASLDELDTLDFAGNNLSGFITKELAILSNLWNLNLSQNKFIGNIPVEFGRFKVLRSLDLSGNFLDGTIPPMLTELKYLETLNLAHNNLSGLIPSGFDQMFSLTIVDISYNQLEGPLPNIRAFNNATIELLRNNKGLCGNVYGLESCPTSRSESHHHSHHHLNKVLLIVLPLVGTIILALICLKFSYHLFHTSNTEENVGGDAIVAQNVFTIWNFDGKIVYENIIEATEDFDDKHLIGFGGHGRVYKDILQTGQVVAVKKLHSVANGGNSNLKSFTNEIQALTEIRHRNVVKLYGFCSHSQLAFSVYEFIEKGSLEKILIDDEQATAFDWNKRVNAIKDVANALCYMHHDCSVPIVHRDISSKNILLDLECVAHVSDFGTAKLLNLNLTNSTSFACTFGYAAPELAYTLRVNEKCDVYSFGVLALEILFGKHPGDIVSLWTVVGSIPDAMLLMDKLDQRLPHPFNPIIEELVKIAMIAFLCLTESPQSRPTMKQVSLELSGL 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00918 1024 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Trre13g00918 1024 SUPERFAMILY RNI-like 221 643 - -
Trre13g00918 1024 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515
Trre13g00918 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 231 316 - -
Trre13g00918 1024 FunFam MDIS1-interacting receptor like kinase 2 832 1023 - -
Trre13g00918 1024 SMART LRR_sd22_2 115 141 - -
Trre13g00918 1024 SMART LRR_sd22_2 526 555 - -
Trre13g00918 1024 SMART LRR_sd22_2 574 603 - -
Trre13g00918 1024 SMART LRR_sd22_2 188 208 - -
Trre13g00918 1024 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Trre13g00918 1024 FunFam Nuclear pore complex protein NUP107 24 182 - -
Trre13g00918 1024 SUPERFAMILY L domain-like 25 309 - -
Trre13g00918 1024 Gene3D Phosphorylase Kinase; domain 1 718 831 - -
Trre13g00918 1024 ProSitePatterns Tyrosine protein kinases specific active-site signature. 877 889 IPR008266 GO:0004672|GO:0006468
Trre13g00918 1024 PANTHER LEUCINE RICH REPEAT KINASE 2 315 1022 - -
Trre13g00918 1024 ProSiteProfiles Protein kinase domain profile. 753 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00918 1024 Pfam Protein kinase domain 754 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00918 1024 SMART LRR_typ_2 550 574 IPR003591 -
Trre13g00918 1024 SMART LRR_typ_2 115 138 IPR003591 -
Trre13g00918 1024 SMART LRR_typ_2 238 262 IPR003591 -
Trre13g00918 1024 SMART LRR_typ_2 139 163 IPR003591 -
Trre13g00918 1024 SMART LRR_typ_2 598 621 IPR003591 -
Trre13g00918 1024 SMART LRR_typ_2 188 214 IPR003591 -
Trre13g00918 1024 SMART LRR_typ_2 91 114 IPR003591 -
Trre13g00918 1024 SUPERFAMILY Protein kinase-like (PK-like) 739 1018 IPR011009 -
Trre13g00918 1024 Gene3D Ribonuclease Inhibitor 357 678 IPR032675 -
Trre13g00918 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 359 673 - -
Trre13g00918 1024 Gene3D Ribonuclease Inhibitor 187 356 IPR032675 -
Trre13g00918 1024 Gene3D Transferase(Phosphotransferase) domain 1 832 1024 - -
Trre13g00918 1024 SUPERFAMILY L domain-like 384 469 - -
Trre13g00918 1024 Pfam Leucine rich repeat 577 635 IPR001611 GO:0005515
Trre13g00918 1024 Pfam Leucine rich repeat 455 515 IPR001611 GO:0005515
Trre13g00918 1024 FunFam Leucine-rich repeat receptor protein kinase MSP1 716 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00918 Trre-Chr13 7543818 7547050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00918 15 925 Receptor kinase-like Gene Family AT4G08850 43.012 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00918 Pkinase 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00918 - - tpra:123888271 1209.51