Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00917 ATGGTTTTCATCTTACTTTCAAACCTTCAGTCCATGAAGTTGTTACCCTTTTGGCTGCTTCTATCAACTTGTTTTTGTGCATTTACAACAGCCACTTTACAAAGTAGAGAAGAAGCTAGTGCTTTATTGAAGTGGAAATCAAGTCTTGACAACCAAAGTCAAACCTTACTATCTTCATGGAGTGGCAATAATTCATGCAACTGGCTTGGAATTACATGTGATGAAGATTCCATATATGTTACTTATGTAAATCTCACAAACATGGGATTGAAAGGTACACTCAATAGTCTTAACTTTACATCACTTCCAAATATTCTTACTCTTGATCTTAGTTTCAACTTCTTGAATGAAAATATTCCTAACCATATTGGAATGTTGTCCAAACTTTCTCATCTTGATCTTAGTCACAATCTTCTCTTAGGAACAATTCCAACTTCTATTGAGAATCTGACCTTGTTGTCACATTTGAGTCTAGGAGGCAACAACCTTTATGGCAACATTCCAAAAGAACTTTGGAATTTGAGCAACTTAAACTACTTAACAGTTGAATTAAATAAGTTTAATGGTTTTGTTTTTGCTCAAGAAATTTTGAAGTTGCATAAGCTAGAGACTCTAGATCTTGGTGGTAATGGTCTTTCCATTGATGGTCTTATTCTCCAAGAAATTTGGAAGTTGGAAAATTTAGCATACCTTTCTTTTCAACTATGCAATGTCAAAGGGTCTATTCCATTTTCTATAGGAAAGTTGGCTAACTTGTCATATCTAAATTTAGCACACAACCATATATTTGGTCATATCCCTATAGAAATAGGGAAGTTGAGGAAGCTAGAATATTTATATTTTTTTGACAATAACTTATCTGGTAGCAATCCTGTGGAAATTGGGGGACTGGTGAACATTAAAGGGTTAAGGTTTAATGACAATAATCTTTCGGGTTCGATTCCTCGTGAAATCGGAATGATGAGAGTTGCAGTTCAAATTGATTTAAACAATAACTCTCTCTCAGGTGAAATTCCACCAACAATTGGAAACTTGAGTAATATGCAATCTCTTACATTTGCTATAAACTATCTCACTGGAAAACTTCCAATGGAAATGAATATGCTTGTCAGTTTGGTTACCCTACAAATTTATGATAATGACTTCATTGGTCAGTTGCCTCACAACATTTGTATTGGTGGAAACTTGAAATATTTGGCTGTTACGAATAACCATTTCACTGGCCCAGTTCGAAAGAGTTTGAAGAATTGTACTAGCATTATAAGACTTAGGCTTGAACAAAATCAACTGAATGGAAATATAACAGAAGATTTTGGTATTTATCCAAATTTGAATTTCATACATTTAGGTGAAAACAATTTTTATGGACACCTTTCATCTAATTGGGGAAAGTGTCCTAACCTGACAAGCCTCATCATTTCTAATAATAATATAACAGGCGATATACCAGTAGAAATAGGCGAGGCACGCAACTTGTATACTCTTGACTTATCTTCGAACAAACTCGAAGGAAAAATTCCAAAGGAGTTAGGCAACTTGACTTTTTTGACAAACCTACTGATAAGAAACAACCATCTTTCAGGAAACATTCCTGTGCAAATAGCATCCTTAGATGAACTTGATACCTTAGACTTTGCAGGAAATAATCTAAGTGGTTTCATCACAAAAGAACTTGCAATTTTGTCCAATTTATGGAACTTAAATTTGAGCCAAAACAAATTCATAGGAAATATTCCTGTTGAATTTGGACGATTTAAAGTCCTTCGAAGTCTTGATCTTAGTGGAAATTTTTTGGATGGAACAATACCACCAATGCTTACAGAGTTGAAATACTTGGAAACATTGAATCTCGCACATAATAACCTTTCTGGCCTTATTCCTTCTGGCTTTGATCAGATGTTTAGCTTGACGATTGTTGATATATCATATAACCAATTGGAGGGTCCACTCCCCAACATTCGAGCCTTCAATAACGCTACGATTGAATTGTTGAGAAATAACAAAGGTTTGTGTGGTAATGTTTATGGCTTAGAGTCTTGTCCAACATCAAGAAGTGAATCTCATCATCATTCTCATCATCATCTTAACAAAGTCCTGTTAATAGTTTTACCCCTTGTTGGAACCATAATACTAGCATTAATTTGCTTGAAATTCTCATATCATCTCTTCCATACATCAAACACCGAAGAAAATGTTGGAGGGGATGCCATTGTAGCTCAAAATGTATTTACAATATGGAACTTTGATGGAAAAATTGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTGATGACAAACATCTCATTGGATTTGGAGGGCATGGAAGGGTGTACAAAGATATTTTGCAGACAGGTCAAGTAGTTGCTGTGAAAAAACTACATTCAGTTGCAAATGGGGGAAATTCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTGACTGAAATTCGACATCGTAATGTTGTGAAACTGTATGGATTTTGCTCACATTCACAATTGGCATTTTCGGTTTATGAGTTCATAGAGAAAGGTAGTTTGGAAAAGATTTTGATAGATGATGAACAAGCAACTGCATTTGATTGGAATAAGAGGGTGAATGCCATTAAAGATGTAGCCAATGCTTTATGCTATATGCATCATGATTGCTCAGTTCCAATTGTTCATCGAGATATATCTAGCAAGAACATTCTATTGGATTTGGAATGTGTGGCTCATGTCTCTGACTTTGGAACAGCTAAGCTTTTAAATCTTAATTTAACCAACTCAACGTCATTTGCATGCACATTCGGATATGCTGCTCCAGAACTGGCATACACGTTGAGAGTGAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAACATCCTGGAGATATTGTATCTTTATGGACCGTCGTTGGCTCTATACCTGATGCAATGCTACTAATGGATAAGTTGGACCAACGTCTTCCTCATCCTTTCAATCCCATCATCGAGGAGTTAGTAAAGATTGCAATGATAGCTTTTCTATGTTTGACTGAAAGTCCTCAATCACGCCCTACCATGAAGCAGGTTTCGCTAGAGTTATCAGGATTGTAA 3108 0.3542 MVFILLSNLQSMKLLPFWLLLSTCFCAFTTATLQSREEASALLKWKSSLDNQSQTLLSSWSGNNSCNWLGITCDEDSIYVTYVNLTNMGLKGTLNSLNFTSLPNILTLDLSFNFLNENIPNHIGMLSKLSHLDLSHNLLLGTIPTSIENLTLLSHLSLGGNNLYGNIPKELWNLSNLNYLTVELNKFNGFVFAQEILKLHKLETLDLGGNGLSIDGLILQEIWKLENLAYLSFQLCNVKGSIPFSIGKLANLSYLNLAHNHIFGHIPIEIGKLRKLEYLYFFDNNLSGSNPVEIGGLVNIKGLRFNDNNLSGSIPREIGMMRVAVQIDLNNNSLSGEIPPTIGNLSNMQSLTFAINYLTGKLPMEMNMLVSLVTLQIYDNDFIGQLPHNICIGGNLKYLAVTNNHFTGPVRKSLKNCTSIIRLRLEQNQLNGNITEDFGIYPNLNFIHLGENNFYGHLSSNWGKCPNLTSLIISNNNITGDIPVEIGEARNLYTLDLSSNKLEGKIPKELGNLTFLTNLLIRNNHLSGNIPVQIASLDELDTLDFAGNNLSGFITKELAILSNLWNLNLSQNKFIGNIPVEFGRFKVLRSLDLSGNFLDGTIPPMLTELKYLETLNLAHNNLSGLIPSGFDQMFSLTIVDISYNQLEGPLPNIRAFNNATIELLRNNKGLCGNVYGLESCPTSRSESHHHSHHHLNKVLLIVLPLVGTIILALICLKFSYHLFHTSNTEENVGGDAIVAQNVFTIWNFDGKIVYENIIEATEDFDDKHLIGFGGHGRVYKDILQTGQVVAVKKLHSVANGGNSNLKSFTNEIQALTEIRHRNVVKLYGFCSHSQLAFSVYEFIEKGSLEKILIDDEQATAFDWNKRVNAIKDVANALCYMHHDCSVPIVHRDISSKNILLDLECVAHVSDFGTAKLLNLNLTNSTSFACTFGYAAPELAYTLRVNEKCDVYSFGVLALEILFGKHPGDIVSLWTVVGSIPDAMLLMDKLDQRLPHPFNPIIEELVKIAMIAFLCLTESPQSRPTMKQVSLELSGL 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00917 1035 SUPERFAMILY RNI-like 232 653 - -
Trre13g00917 1035 SMART LRR_typ_2 561 585 IPR003591 -
Trre13g00917 1035 SMART LRR_typ_2 249 273 IPR003591 -
Trre13g00917 1035 SMART LRR_typ_2 609 632 IPR003591 -
Trre13g00917 1035 SMART LRR_typ_2 150 174 IPR003591 -
Trre13g00917 1035 SMART LRR_typ_2 199 225 IPR003591 -
Trre13g00917 1035 SMART LRR_typ_2 102 125 IPR003591 -
Trre13g00917 1035 SMART LRR_typ_2 126 149 IPR003591 -
Trre13g00917 1035 FunFam MDIS1-interacting receptor like kinase 2 843 1034 - -
Trre13g00917 1035 FunFam Nuclear pore complex protein NUP107 35 193 - -
Trre13g00917 1035 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 370 684 - -
Trre13g00917 1035 SUPERFAMILY Protein kinase-like (PK-like) 750 1029 IPR011009 -
Trre13g00917 1035 PANTHER LEUCINE RICH REPEAT KINASE 2 326 1033 - -
Trre13g00917 1035 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Trre13g00917 1035 Gene3D Ribonuclease Inhibitor 195 365 IPR032675 -
Trre13g00917 1035 FunFam Leucine-rich repeat receptor protein kinase EMS1 242 327 - -
Trre13g00917 1035 Gene3D Transferase(Phosphotransferase) domain 1 843 1035 - -
Trre13g00917 1035 ProSitePatterns Tyrosine protein kinases specific active-site signature. 888 900 IPR008266 GO:0004672|GO:0006468
Trre13g00917 1035 SUPERFAMILY L domain-like 395 480 - -
Trre13g00917 1035 SUPERFAMILY L domain-like 36 320 - -
Trre13g00917 1035 ProSiteProfiles Protein kinase domain profile. 764 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00917 1035 Gene3D Phosphorylase Kinase; domain 1 729 842 - -
Trre13g00917 1035 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Trre13g00917 1035 FunFam Leucine-rich repeat receptor protein kinase MSP1 727 842 - -
Trre13g00917 1035 Gene3D Ribonuclease Inhibitor 35 194 IPR032675 -
Trre13g00917 1035 Pfam Protein kinase domain 765 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00917 1035 Pfam Leucine rich repeat 588 646 IPR001611 GO:0005515
Trre13g00917 1035 Pfam Leucine rich repeat 466 526 IPR001611 GO:0005515
Trre13g00917 1035 Gene3D Ribonuclease Inhibitor 366 689 IPR032675 -
Trre13g00917 1035 SMART LRR_sd22_2 126 152 - -
Trre13g00917 1035 SMART LRR_sd22_2 537 566 - -
Trre13g00917 1035 SMART LRR_sd22_2 585 614 - -
Trre13g00917 1035 SMART LRR_sd22_2 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00917 Trre-Chr13 7543785 7547050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00917 26 936 Receptor kinase-like Gene Family AT4G08850 43.012 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00917 Pkinase 2.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00917 - - tpra:123888271 1211.82