Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00916 ATGAACCTAATATACGAACAGAGGCTTCAAGTCGCTGCTAAAATAATACTTGACGACGATGCAAGTTCCTCTGACGCGCCGCCGAGTGAAGAAGAGCTTGGGATTAGGGCAACACTCAAGCCTCACCAAGTTGAAGGGGTTTCGTGGCTCATTCGGAGGTATAAACTCGGCGTTAACGTTGTTCTCGGGGATGAGATGGGATTGGGCAAGACACTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACATGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCTAAATTAGAAGTCTTTAAATATGTTGGTGATAAAGAATACAGACGCAGTCTACGTATGAAAACACATGAACATGTAACAAAGCAGCCAACACATAATGCCATTTTGCCTTTTGACGTGCTGTTAACATCATATGACATTGCACTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCCCAAAGGCTGAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACGGGCACACCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGGACACTAGATCAGTTCCTTTCTACATTCAGGGATATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGACTGCTTTTATGCTACGACGAACCAAATCAAAGCTTATGGAGTCTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACAGTGTTAGTACCCCTTGTCAGCCTGCAAGAAAAGGTCTACATGTCGATACTGAGGAAAGAACTTCCGAAGCTAGTTGCACTCTCTTCGGGAACATCAAATCACCAATCATTACAGAATACTGTATTACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAGCTCTTGATTCTGGACCAACTTCTTAGAAAGCTACATCATTATGGACACCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATATTGCAGGATTTTCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATACGGGCTTGAATTTTGAAGCTGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCGCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGAAGATAAAAATTTAGCTGAAGTTGGAACTAGTGATTTGAAATCCATCATAGTCGGGTTGCGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGAAATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATATGATGTTAAGGAAAGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGACGAAGCTTCTTATCTCTCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGTGACTCAATCATTGACTTGAGAAGCAGTAGGAACTTAGATGAGGAAAAGAGTCAAAAACTTGAGATTGCAAAGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGTTGGATACCATTCATTGAATGTGAAAGAACCTATTAGCCCACCAGATGACAACATCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCCTCAAATGTTTCTTCATCTGAACCGGCTATAATCTTCAGCTGTGTTGACACCTCTGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTAACTAAACTTTCATCAAGCATCAATGAAGCATATGAACGGGCTTCTGAACACGGGGATCTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAAAATATGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAAGCAGCGTTCTCAGCCGCTCAATACACTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAGTATATACGTGTATTATTATCGAAAATCACGTTAA 2637 0.4096 MNLIYEQRLQVAAKIILDDDASSSDAPPSEEELGIRATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTKQPTHNAILPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFRDISDLTSVHDSPKVKERLQILRSVLTAFMLRRTKSKLMESGSLVLPPLTETTVLVPLVSLQEKVYMSILRKELPKLVALSSGTSNHQSLQNTVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEADQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKNLAEVGTSDLKSIIVGLRMFDPNEINDGKDKEMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGYDVKERGSASLSCDLDLDEASYLSWVKKFEEVSKSSCDSIIDLRSSRNLDEEKSQKLEIAKKKAEEKKLSKWNAVGYHSLNVKEPISPPDDNIILDAGSVHFVYGDCTAPSNVSSSEPAIIFSCVDTSGRWGHGGMFDALTKLSSSINEAYERASEHGDLHLGDLHLIRLEDGCDDQNMDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQYTASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNISIYVYYYRKSR 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00916 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 541 IPR001650 -
Trre13g00916 878 CDD Macro_Poa1p-like_SNF2 705 863 - -
Trre13g00916 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Trre13g00916 878 Pfam Helicase conserved C-terminal domain 366 490 IPR001650 -
Trre13g00916 878 Coils Coil 653 673 - -
Trre13g00916 878 Gene3D - 13 283 IPR038718 -
Trre13g00916 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 540 IPR027417 -
Trre13g00916 878 SUPERFAMILY Macro domain-like 706 873 IPR043472 -
Trre13g00916 878 SMART helicmild6 395 490 IPR001650 -
Trre13g00916 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 272 IPR027417 -
Trre13g00916 878 SMART ultradead3 35 235 IPR014001 -
Trre13g00916 878 CDD SF2_C_SNF 358 501 - -
Trre13g00916 878 Gene3D - 284 593 IPR027417 -
Trre13g00916 878 FunFam Putative helicase CHR10 283 595 - -
Trre13g00916 878 Pfam SNF2-related domain 57 345 IPR000330 GO:0005524|GO:0140658
Trre13g00916 878 Gene3D Leucine Aminopeptidase, subunit E, domain 1 705 878 IPR043472 -
Trre13g00916 878 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 598 IPR031053 GO:0003678|GO:0006281|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00916 Trre-Chr13 7528306 7541066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00916 19 549 RAD5 or RAD16-like Gene Family AT1G02670 24.045 2.65e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g00916 SNF2_N 9.2e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00916 K20092 - gmx:100797182 1371.3