Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00915 ATGAACCTAATATACGAACAGAGGCTTCAAGTCGCTGCTAAAATAATACTTGACGACGATGCAAGTTCCTCTGACGCGCCGCCGAGTGAAGAAGAGCTTGGGATTAGGGCAACACTCAAGCCTCACCAAGTTGAAGGGGTTTCGTGGCTCATTCGGAGGTATAAACTCGGCGTTAACGTTGTTCTCGGGGATGAGATGGGATTGGGCAAGACACTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACATGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCTAAATTAGAAGTCTTTAAATATGTTGGTGATAAAGAATACAGACGCAGTCTACGTATGAAAACACATGAACATGTAACAAAGCAGCCAACACATAATCAGGCCATTTTGCCTTTTGACGTGCTGTTAACATCATATGACATTGCACTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCCCAAAGGCTGAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACGGGCACACCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGGACACTAGATCAGTTCCTTTCTACATTCAGGGATATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGACTGCTTTTATGCTACGACGAACCAAATCAAAGCTTATGGAGTCTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACAGTGTTAGTACCCCTTGTCAGCCTGCAAGAAAAGGTCTACATGTCGATACTGAGGAAAGAACTTCCGAAGCTAGTTGCACTCTCTTCGGGAACATCAAATCACCAATCATTACAGAATACTGTATTACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAGCTCTTGATTCTGGACCAACTTCTTAGAAAGCTACATCATTATGGACACCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATATTGCAGGATTTTCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATACGGGCTTGAATTTTGAAGCTGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCGCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGAAGATAAAAATTTAGCTGAAGTTGGAACTAGTGATTTGAAATCCATCATAGTCGGGTTGCGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGAAATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATATGATGTTAAGGAAAGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGACGAAGCTTCTTATCTCTCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGTGACTCAATCATTGACTTGAGAAGCAGTAGGAACTTAGATGAGGAAAAGAGTCAAAAACTTGAGATTGCAAAGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGTTGGATACCATTCATTGAATGTGAAAGAACCTATTAGCCCACCAGATGACAACATCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCCTCAAATGTTTCTTCATCTGAACCGGCTATAATCTTCAGCTGTGTTGACACCTCTGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTAACTAAACTTTCATCAAGCATCAATGAAGCATATGAACGGGCTTCTGAACACGGGGATCTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAAAATATGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAAGCAGCGTTCTCAGCCGCTCAATACACTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAGTATATACGTGTATTATTATCGAAAATCACGTTAA 2640 0.4098 MNLIYEQRLQVAAKIILDDDASSSDAPPSEEELGIRATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTKQPTHNQAILPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFRDISDLTSVHDSPKVKERLQILRSVLTAFMLRRTKSKLMESGSLVLPPLTETTVLVPLVSLQEKVYMSILRKELPKLVALSSGTSNHQSLQNTVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEADQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKNLAEVGTSDLKSIIVGLRMFDPNEINDGKDKEMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGYDVKERGSASLSCDLDLDEASYLSWVKKFEEVSKSSCDSIIDLRSSRNLDEEKSQKLEIAKKKAEEKKLSKWNAVGYHSLNVKEPISPPDDNIILDAGSVHFVYGDCTAPSNVSSSEPAIIFSCVDTSGRWGHGGMFDALTKLSSSINEAYERASEHGDLHLGDLHLIRLEDGCDDQNMDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQYTASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNISIYVYYYRKSR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00915 879 CDD SF2_C_SNF 359 502 - -
Trre13g00915 879 Gene3D - 285 594 IPR027417 -
Trre13g00915 879 SMART helicmild6 396 491 IPR001650 -
Trre13g00915 879 Pfam Helicase conserved C-terminal domain 367 491 IPR001650 -
Trre13g00915 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 541 IPR027417 -
Trre13g00915 879 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 606 IPR031053 GO:0003678|GO:0006281|GO:0006338
Trre13g00915 879 SMART ultradead3 35 236 IPR014001 -
Trre13g00915 879 FunFam Putative helicase CHR10 284 596 - -
Trre13g00915 879 SUPERFAMILY Macro domain-like 707 874 IPR043472 -
Trre13g00915 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 273 IPR027417 -
Trre13g00915 879 Coils Coil 654 674 - -
Trre13g00915 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Trre13g00915 879 Pfam SNF2-related domain 57 346 IPR000330 GO:0005524|GO:0140658
Trre13g00915 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 542 IPR001650 -
Trre13g00915 879 Gene3D Leucine Aminopeptidase, subunit E, domain 1 706 879 IPR043472 -
Trre13g00915 879 CDD Macro_Poa1p-like_SNF2 706 864 - -
Trre13g00915 879 Gene3D - 13 284 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00915 Trre-Chr13 7528306 7541066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00915 19 550 RAD5 or RAD16-like Gene Family AT1G02670 24.165 6.46e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g00915 SNF2_N 1.8e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00915 K20092 - gmx:100797182 1371.3