Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00909 ATGGCACGTTCCAGGTCCACCGCGAAGCGCCTTCTATACGCACTCCGTTCCTCCACCACAACCACCACAACCACAACCACAGTCTCTCCATCTCCAGCAAGCTCCCTAATCGGCGGAACTTTCCACCTCAGACACTTCTCATCCGGGAACGTTGCCCGCGCAAAGGCAGCTACAATTGACAAGGATCCATGGTGGAAGGAATCGATGGAAATGACTCGTAATATCGGGATCTCGGCACATATTGATTCCGGTAAGACGACGTTGACGGAGAGGATACTGTTTTATACTGGTCGGATCCATGAGATTCATGAGGTAAGGGGAAAGGATGGCGTTGGTGCTAAGATGGATTCTATGGATTTGGAGAGAGAGAAAGGGATTACTATACAATCTGCTGCTACTTATTGCACTTGGAAAGATTATAAGATCAACATAATTGACACACCTGGTCATGTCGATTTCACCATTGAGGTTGAGAGGGCTTTACGTGTCCTTGATGGTGCCATTCTTGTTTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGACAAATGAAAAGATATGAGGTTCCAAGACTTGCATTTATCAATAAGCTTGATCGAATGGGAGCAGATCCGTGGAAAGTTTTAAATCAGGCTAGATCTAAGCTTCGCCATCATAGTGCTGCGATTCAAGTTCCAATAGGTTTGGAAGATGATTTTAAAGGACTTATTGATCTTGTGAAGTTAAAGGCCTATTATTTTCATGGTCCAAATGGTGACAAAATTGATATTGAAGAAGTGCCTTCAGATATGGAAGCCTTGGTCGCAGAAAAAAGACATGAACTAATAGAAACTGTGTCAGAGGTTGATGATATACTTGCTGAAGCGTTTCTTAGCGATGAGACCATTTCCGATGCTGATCTTGAGGGAGCAATTCGTAGGGCTACCATGGCGCGGAAATTTATCCCGGTATTCATGGGTAGTGCTTTCAAAAACAAGGGGATACAGCCACTTCTGGATGGTGTACTTAGTTATTTGCCATGTCCAGTTGAAGTTAATAATTATGCTCTTGATCAATCTAACAATGAGGAGAAGGTTGAGCTGACTGGAAATCCTGATGGGCCCCTTGTAGCATTGGCTTTCAAATTGGAGGAAGGGAAGTTTGGTCAGTTAACATATTTAAGAATTTATGAGGGTGTCATTCGGAAGGGTGATTCTGTTATTAATGTTAACACTGGTAAGAAGACCAAGATTCCTCGATTGATTCGGATGCATTCTAATGAGATGGAGGACATTCAAGAGGCCCATGCTGGCCAAATAGTTGCTGTCTTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCAGTTAAATACACAATGACTTCTATGAGTGTTCCCGAGCCCGTGATGTCGTTAGCTGTGCAGCCAGTCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGAGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGATATTTATGTTGAACGCATTAGGAGGGAGTACAAGGTTGATGCTTCAGTTGGAAAGCCACGTGTAAACTTCAGAGAAACTGTTACTCAACGTTCTGATTTTGATTATTTACATAAGAAGCAAAGCGGAGGGCAAGGACAATACGGACGGGTGATCGGGTATATTGAACCACTTCCTGCTGGGTCAGGAACTAAGTTTGAATTTGAAAACATGCTTGTTGGTCAAGCCGTTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTTAAAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTAGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGTGAACTTGCCTTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTCAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGATGGTGATGACTCTGTCATTACAGCTCATGTCCCTCTTAACAATATGTTTGGGTATTCTACATCTCTTCGTTCGATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAAGAACATTCACCCGTTTCTCATGATGTTCAGACCCAATTAATAAACGCATACAAGGGCAATAAGGCGGCGGATGAATGA 2289 0.4316 MARSRSTAKRLLYALRSSTTTTTTTTTVSPSPASSLIGGTFHLRHFSSGNVARAKAATIDKDPWWKESMEMTRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMKRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAIQVPIGLEDDFKGLIDLVKLKAYYFHGPNGDKIDIEEVPSDMEALVAEKRHELIETVSEVDDILAEAFLSDETISDADLEGAIRRATMARKFIPVFMGSAFKNKGIQPLLDGVLSYLPCPVEVNNYALDQSNNEEKVELTGNPDGPLVALAFKLEEGKFGQLTYLRIYEGVIRKGDSVINVNTGKKTKIPRLIRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMSVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRSDFDYLHKKQSGGQGQYGRVIGYIEPLPAGSGTKFEFENMLVGQAVPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGVIVGNDQDGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINAYKGNKAADE 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00909 762 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 70 347 IPR000795 GO:0003924|GO:0005525
Trre13g00909 762 FunFam Elongation factor G, mitochondrial 355 468 - -
Trre13g00909 762 Pfam Elongation Factor G, domain III 465 539 IPR041095 -
Trre13g00909 762 Gene3D Translation factors 354 471 - -
Trre13g00909 762 Gene3D Elongation Factor G (Translational Gtpase), domain 3 472 545 - -
Trre13g00909 762 Gene3D - 667 737 - -
Trre13g00909 762 Pfam Elongation factor G, domain IV 540 660 IPR005517 GO:0005525
Trre13g00909 762 SUPERFAMILY Ribosomal protein S5 domain 2-like 540 662 IPR020568 -
Trre13g00909 762 Gene3D - 546 751 IPR014721 -
Trre13g00909 762 NCBIfam elongation factor G 68 755 IPR004540 GO:0003746|GO:0005525|GO:0006414
Trre13g00909 762 Pfam Elongation factor Tu domain 2 386 452 IPR004161 GO:0005525
Trre13g00909 762 SUPERFAMILY Translation proteins 311 463 IPR009000 -
Trre13g00909 762 FunFam Elongation factor G 546 682 - -
Trre13g00909 762 CDD mtEFG1_C 666 743 IPR035649 -
Trre13g00909 762 CDD EFG_mtEFG1_IV 544 659 IPR005517 GO:0005525
Trre13g00909 762 CDD mtEFG1_II_like 373 453 - -
Trre13g00909 762 Pfam Elongation factor G C-terminus 664 749 IPR000640 -
Trre13g00909 762 SUPERFAMILY EF-G C-terminal domain-like 666 755 IPR035647 -
Trre13g00909 762 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 116 131 IPR031157 -
Trre13g00909 762 CDD EF-G 74 346 - -
Trre13g00909 762 SMART EFG_IV_2 541 661 IPR005517 GO:0005525
Trre13g00909 762 SMART EFG_C_a 663 750 IPR000640 -
Trre13g00909 762 SUPERFAMILY EF-G C-terminal domain-like 463 540 IPR035647 -
Trre13g00909 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 344 IPR027417 -
Trre13g00909 762 Hamap Elongation factor G [fusA]. 68 754 IPR004540 GO:0003746|GO:0005525|GO:0006414
Trre13g00909 762 PRINTS GTP-binding elongation factor signature 74 87 IPR000795 GO:0003924|GO:0005525
Trre13g00909 762 PRINTS GTP-binding elongation factor signature 143 153 IPR000795 GO:0003924|GO:0005525
Trre13g00909 762 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Trre13g00909 762 PRINTS GTP-binding elongation factor signature 159 170 IPR000795 GO:0003924|GO:0005525
Trre13g00909 762 PRINTS GTP-binding elongation factor signature 123 131 IPR000795 GO:0003924|GO:0005525
Trre13g00909 762 Pfam Elongation factor Tu GTP binding domain 72 344 IPR000795 GO:0003924|GO:0005525
Trre13g00909 762 FunFam Elongation factor G, mitochondrial 63 350 - -
Trre13g00909 762 FunFam Elongation factor G 469 545 - -
Trre13g00909 762 Gene3D - 65 350 IPR027417 -
Trre13g00909 762 NCBIfam small GTP-binding protein domain 72 244 IPR005225 GO:0005525
Trre13g00909 762 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 5 753 - -
Trre13g00909 762 FunFam Elongation factor G 667 737 - -
Trre13g00909 762 CDD EFG_III 466 541 IPR009022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00909 Trre-Chr13 7446301 7466353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00909 388 548 Eukaryotic Initiation Factors Gene Family AT3G22980 23.596 9.60e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00909 K02355 - gmx:100783315 1359.36