Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00908 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAATAACAACACTAACGGTAACAGTAACGGTTTTACTACTTGGGGCAGTACTAGTAGTGGTACTACTCCTACCTGGAACATGGAAAATACTTTTCATGTTACAGCTGAAAATACCGCCGCTGTTGTTAATCATCACGATGCAGATTTAAGAAACGTGATGATGTTTAACAACGGCGGTGGAAGACAGCATAGAGGAAGCTATGCTGAACCGTATGGAGGAGGTGGGTCAAGGTCTCACGTGATGCCTGACCCACATCTCACGTGTTTGAAGTTAGGGAAGAGGCATTATTTTGAGGATGTGAATGGTGGTGGTGGAGGGTTGGGAGATAAGAGAGGAAAAGGGTACTTTGGTGGTGGTGGGAAGGTTGCTGCGGCGGCGGGTTTAGCGGTGGCTAGGTGTCAGGTGGATGGATGCCACGTGGCATTGATGAATGCTAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCGAAGGCACCAAAAGTTGTGGTTTTGGGTTTAGAGCAGAGATTCTGCCAGCAGTGTAGCAGGTTCCATGTTGTGTCGGAGTTTGATGATTCAAAGAGAAGTTGTAGAAGGAGACTGGCAGGACACAACGAGAGAAGAAGAAAGAGCTCCCACGATTCTGTTGCGAGGAATTCCTCACAAGGTGGGTGTGCTCTCTCTCTTCTGTCATCTAGGACTGATTCATGGCTTTCACCTGCTGATCTCTCTGTAAGATGCAGTGCTGCGTTAAGCGAATTGATAGCAGAAAATCGGGCAGCAATCATGGCTAGGCAATATGTCTCGGATAGAGACCACCACCATTCAGTGGAAGACTATAGGGAGATCCAGCCCGAGTCGAATTATTTCCCACAACAGATGTTTCCTCAAACACACTAA 933 0.4684 MDFGGNMFCLNNRDQNNNTNGNSNGFTTWGSTSSGTTPTWNMENTFHVTAENTAAVVNHHDADLRNVMMFNNGGGRQHRGSYAEPYGGGGSRSHVMPDPHLTCLKLGKRHYFEDVNGGGGGLGDKRGKGYFGGGGKVAAAAGLAVARCQVDGCHVALMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRTDSWLSPADLSVRCSAALSELIAENRAAIMARQYVSDRDHHHSVEDYREIQPESNYFPQQMFPQTH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00908 310 SUPERFAMILY SBT domain 146 227 IPR036893 GO:0003677|GO:0005634
Trre13g00908 310 MobiDBLite consensus disorder prediction 212 233 - -
Trre13g00908 310 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Trre13g00908 310 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 243 IPR044817 GO:0003677
Trre13g00908 310 Pfam SBP domain 148 221 IPR004333 GO:0003677
Trre13g00908 310 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Trre13g00908 310 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00908 Trre-Chr13 7430310 7435048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00908 103 221 SBP-box Gene Family AT1G27360 55.285 3.40e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre13g00908 SBP 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00908 - - tpra:123889927 473.396