Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00902 ATGAGTCAGTGTGTTCCTAGTTGGGATGTTGACGAAAATCCACCACCACTACCAAGATCTCTTTCTCTTCGTTCCAGCTCTAACTCAACTGCCAATCTTGATGTTCCCATGTTAGACTATGATGTTGCAGAACTTACATGGGAAAATGGACAAATTTCTATGCATGGCTTAGGGTTACCGAAAGTGCCGGTTAAACCACCTTCAACAACTGCAGCAACCAATCCCTCTAAGGAAAATTGGGAAAAGCCCGCTCGTACGAGTGGCACCTTGGAGTCCATAGTAAACCAAGCAACTAGCTTTCCACACCGCGGAAAATCACCTTTTCTCGTTGGTGGTGGTGTCTACGGGAACATGTTAGTCCCATGGCTTGACCCACATCGTGCTGCAGCCATCGCTGCGGCCACCAACGGCCTAACCGTTGATGCGTTGGTTCCCTGCTCCAATACCACAAAGGAGCAGAGAAGTCAGACAATGGATCCAATCCCTAGAGGAGGGGTTGGATCATGCATGGTTGGTGGCCCTACACCTGTAGGGTCATGTAGCGCTGTTGTGGCCGCAACACATGAGGAAGGTGGACTCCTTACTGCGGCAAAGCGTGTAAGGGTGGCACATGTGGCGGGGAGCGGTAGGGATCAAAGTATGAGTAACAGTGCAACCTTAGGGAGACAAAGTCAGAAAGTTACATTAGATACGTATGACATGGAATTTGGTAAGACTGGTTTCACTTCAACTTCAATAGCATCAATGGATAATACAAGCTCTGAAAAACAGTGCACAAGGACCAACACCGTAGATGACCATGACTCTGTTTGCCACAGTAGACCATCAAGGGATGATGCTGACGAGGATGAGAAAAAAAGAGAAAATAGAAAATCATCCGTGTCCACAAAAAGGAGTAGAGCTGCAGCTATTCACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAATCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTAAAACAATTGCAAGCACAAGTGCACATGGTGAATAGATTCAACATGTCACCGATGATGATGCCGATGACCATGCAACAACAACTTCAAATGTCGATGATGAATCCAATGGGCATGGGTATGGGGATGGGTATGGCCGGGATGGGCATGGGTATGGGAATGTCGGGCATGGGAATGGATATGAACGCCATGAATCGAGCTAACATTCCCGGAATGCCGCAGGTTCTCCACCCTTCTGCATTCATGCCCATGGCTTCATGGGATGCCGGAAGCAGTAGCGACCGACTTCAGGGACCTCCACCGACTGGGATGGCTGACCCTCTCTCCAAATTTTTTGGATGCCAATCACAGCCCATGACCATGGATGCTTATAGTAGGATTGCTGCCATGTATCAGCAGATGCAACAACAACCTCCAGGAGCACCAGGTTCAAAGAGTTGA 1476 0.4743 MSQCVPSWDVDENPPPLPRSLSLRSSSNSTANLDVPMLDYDVAELTWENGQISMHGLGLPKVPVKPPSTTAATNPSKENWEKPARTSGTLESIVNQATSFPHRGKSPFLVGGGVYGNMLVPWLDPHRAAAIAAATNGLTVDALVPCSNTTKEQRSQTMDPIPRGGVGSCMVGGPTPVGSCSAVVAATHEEGGLLTAAKRVRVAHVAGSGRDQSMSNSATLGRQSQKVTLDTYDMEFGKTGFTSTSIASMDNTSSEKQCTRTNTVDDHDSVCHSRPSRDDADEDEKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVHMVNRFNMSPMMMPMTMQQQLQMSMMNPMGMGMGMGMAGMGMGMGMSGMGMDMNAMNRANIPGMPQVLHPSAFMPMASWDAGSSSDRLQGPPPTGMADPLSKFFGCQSQPMTMDAYSRIAAMYQQMQQQPPGAPGSKS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00902 491 Coils Coil 306 326 - -
Trre13g00902 491 SMART finulus 306 355 IPR011598 GO:0046983
Trre13g00902 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Trre13g00902 491 MobiDBLite consensus disorder prediction 260 295 - -
Trre13g00902 491 CDD bHLH_AtPIF_like 300 355 IPR047265 -
Trre13g00902 491 MobiDBLite consensus disorder prediction 63 85 - -
Trre13g00902 491 FunFam transcription factor UNE10 isoform X1 295 360 - -
Trre13g00902 491 MobiDBLite consensus disorder prediction 242 318 - -
Trre13g00902 491 MobiDBLite consensus disorder prediction 242 259 - -
Trre13g00902 491 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 487 IPR031066 -
Trre13g00902 491 MobiDBLite consensus disorder prediction 303 318 - -
Trre13g00902 491 Pfam Helix-loop-helix DNA-binding domain 305 350 IPR011598 GO:0046983
Trre13g00902 491 MobiDBLite consensus disorder prediction 67 85 - -
Trre13g00902 491 MobiDBLite consensus disorder prediction 1 28 - -
Trre13g00902 491 Gene3D - 295 360 IPR036638 GO:0046983
Trre13g00902 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 366 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00902 Trre-Chr13 7366470 7373392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00902 1 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.444 3.68e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g00902 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00902 - - gmx:100798775 536.184