Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00899 ATGGCTCTTAGACTTGAACATGCATTCTCTAATATATTTATCTTTGTAGTTTCACTCTTAATATTAGTGACCCCTTCCTCTTGTTTTAATCCAAGGAAGTTTGTTAATTTAACTTCATACTCATCACCTGATTCTGATTGGTCACCTTCAGTGGCTACTTGGTATGGAGAAGCTAATGGAGATGGAAGTGAAGGTGGTGCTTGTGGATATCAAAATGCTGTTGGGCAACCACCATTCTCTTCGATGATATCGGCCGGAAGCCCTGCTATCTATGATTCAGGCAAAGGTTGCGGTTCTTGTTACGAGGTGAAGTGCACAGGAAATTCTGCATGTTCAGGAAGCCCTGTGAGGGTAGTAATCACTGATGAGTGTGCTGGTTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGTAGTGCTTTTGGATCAATGGCAATTTCAGGTCAAGATCAACAACTACGCAATGCTGGAAAAATAGACATGGAACATAGAAGAGTTGAATGCAACTATGGTAGATCAATAGCTTTTCATGTGGACTCTGGATCCAATCAACAATACTTTGCTGCTTTAATTGAATATGAGAATGGAGATGGTGATCTTAACAGAGTTGAACTCAAGGAAGCACTTGACGATTCCACTTGGGATTCCATGCAACAATCATGGGGTGCTGTTTGGAAATTTGATAAAGGAGGACCATTAAAAGCACCATTTTCTATTAAGCTAACAACACTTACATCTGGCAAAACTATTGTGGCAGAGAATGTGATTCCTGCAGGTTGGAAGCCTGGTCAGACTTATAGATCAATTGTGAATTTTTAA 822 0.4015 MALRLEHAFSNIFIFVVSLLILVTPSSCFNPRKFVNLTSYSSPDSDWSPSVATWYGEANGDGSEGGACGYQNAVGQPPFSSMISAGSPAIYDSGKGCGSCYEVKCTGNSACSGSPVRVVITDECAGCGSDAQYHFDLSGSAFGSMAISGQDQQLRNAGKIDMEHRRVECNYGRSIAFHVDSGSNQQYFAALIEYENGDGDLNRVELKEALDDSTWDSMQQSWGAVWKFDKGGPLKAPFSIKLTTLTSGKTIVAENVIPAGWKPGQTYRSIVNF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00899 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Trre13g00899 273 SMART dpbb_1 83 164 IPR007112 -
Trre13g00899 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Trre13g00899 273 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Trre13g00899 273 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Trre13g00899 273 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Trre13g00899 273 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Trre13g00899 273 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Trre13g00899 273 PANTHER EXPANSIN-B3 23 273 - -
Trre13g00899 273 SUPERFAMILY Barwin-like endoglucanases 37 171 IPR036908 -
Trre13g00899 273 Gene3D - 171 273 IPR036749 -
Trre13g00899 273 CDD DPBB_EXPB_N 51 169 - -
Trre13g00899 273 Gene3D - 33 170 IPR036908 -
Trre13g00899 273 SUPERFAMILY PHL pollen allergen 173 269 IPR036749 -
Trre13g00899 273 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Trre13g00899 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 174 IPR007112 -
Trre13g00899 273 Pfam Lytic transglycolase 84 162 IPR009009 -
Trre13g00899 273 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Trre13g00899 273 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Trre13g00899 273 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Trre13g00899 273 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Trre13g00899 273 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Trre13g00899 273 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00899 Trre-Chr13 7318763 7321159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00899 26 273 Expansin Gene Family AT1G65680 60.241 1.13e-113 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00899 - - gmx:548090 457.988