Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00898 ATGGCTCTTACATATGCACATGCATTCTCTCATACACTCATCTTTGTAGTATCACTCTCCATATTCCTAGTGATCCCTTCCTCTTGTCTTAATCCTAGGAAGTTTCTTAATGTTACTTCATACTTCCCATCTGATTATCAATCATCTTCATATGCCACCTTTTATGGACCTCCCGATGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAAAGCTGTTGGGCAACCTCCTTTCAATTCAATGATATCGGCAGGAGGCCCTGCCATTTACAAGGGAGGCAAGGGTTGTGGTGCTTGTTATCAGATAAGGTGCGTAGGAAATCCAGCATGCTCAGGCAATCCTGTTACAGTAGTTATTTCTGATGAGTGCCCTGGTTGTCCTCATGATTTTGATATGAGTGGCAAAGCTTTTGGTTCCATGGCAATTTCAGGTCATGCTGACCAACTACGCAATGCTGGGAAAATTCTTGTTCAGTATTCAAGAGTTGCATGCAACTATCCTTGTGTGTCAATAGCTTTCCGTGTGGACCTTGGAACTAATCCATATTATTTTGCTACCTTAATAGAATATGAGGATGGAGATGGTGATCTCAAAACAGTTGAAGTCAAAGAAGCAAACTCAGCAAATTGGGAAACCATGCAAGAATCAGTTGGTGCTGTTTGGAAATTAAATAAAGGATCACCAATGAGAGCACCATTTTCTCTTAGGTTAACCACAATTGAGTCTGGCAAGGTATTTGTTGCCAATAATGTAATCCCTGTAGGTTATAAGCCTGGTGAAACTTATAGAGCAAGTGGAAATTTTAATTAA 813 0.4071 MALTYAHAFSHTLIFVVSLSIFLVIPSSCLNPRKFLNVTSYFPSDYQSSSYATFYGPPDGDGSEGGACGYGKAVGQPPFNSMISAGGPAIYKGGKGCGACYQIRCVGNPACSGNPVTVVISDECPGCPHDFDMSGKAFGSMAISGHADQLRNAGKILVQYSRVACNYPCVSIAFRVDLGTNPYYFATLIEYEDGDGDLKTVEVKEANSANWETMQESVGAVWKLNKGSPMRAPFSLRLTTIESGKVFVANNVIPVGYKPGETYRASGNFN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00898 270 SMART dpbb_1 83 160 IPR007112 -
Trre13g00898 270 CDD DPBB_EXPB_N 52 165 - -
Trre13g00898 270 SUPERFAMILY Barwin-like endoglucanases 41 168 IPR036908 -
Trre13g00898 270 Pfam Expansin C-terminal domain 172 254 IPR007117 -
Trre13g00898 270 SUPERFAMILY PHL pollen allergen 172 264 IPR036749 -
Trre13g00898 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 170 IPR007112 -
Trre13g00898 270 PANTHER EXPANSIN-B3 23 266 - -
Trre13g00898 270 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Trre13g00898 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Trre13g00898 270 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Trre13g00898 270 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Trre13g00898 270 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Trre13g00898 270 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Trre13g00898 270 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Trre13g00898 270 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Trre13g00898 270 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
Trre13g00898 270 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Trre13g00898 270 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Trre13g00898 270 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Trre13g00898 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 265 IPR007117 -
Trre13g00898 270 Gene3D - 38 166 IPR036908 -
Trre13g00898 270 Pfam Lytic transglycolase 84 160 IPR009009 -
Trre13g00898 270 Gene3D - 169 268 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00898 Trre-Chr13 7307040 7308535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00898 29 269 Expansin Gene Family AT1G65680 53.659 2.18e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00898 - - gmx:548090 361.688