Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00897 ATGGCTACTTTTTATGGACCTCCCGACGGTGATGGAAGTGAAAGTGGTGCTTGTGGATATGGAAAAAAAGTTGGGCTGCCTCCTTTCAACTCAATGATATCGGCAGGAAGTCAGGTCATCTTTGCATCAGGAAAAGGCTGTGGTTCTTGTTATCAGTTGAAGTGCACTGGAAATCCTTCTTGCTCAGGCAATCCTATTACTGTAGTTATCACTGATTTTTGTCCTGAATGTGCTCATTATTTTGATTTGAGTGGGAAAGCTTTTGGTTCCATGGCAATTTCTGGTCAAGCTGACAAGCTACGCATTGCTGGAAAAGTTCCCGTTGAATATACAAGAGTTGCATGCAACTACCCTGGTGTGTCAATAACTTTTAGTGTGGACTCTGGATCTAATAAAAATTATTTTGCTACTGTAATTGAATATGAGGATGGGGATGGTGATCTCAAAACAGTTGAACTAAAAGAAGCTCTTCAATCAGCAAATTGGGAAACCATGCAACAATCATGGGGTGCTGTTTGGAAAATTGATAAAGGGGCACCATTGAGAGCACCATTTTCTATTAGGCTAACTACAATTGAGTCTGGTAAAGTATTTGTTGCCAATAATGTGATCCCTGCAGGTTGGAACTTGGAAGCCTGGTCAAACTTATAG 651 0.4086 MATFYGPPDGDGSESGACGYGKKVGLPPFNSMISAGSQVIFASGKGCGSCYQLKCTGNPSCSGNPITVVITDFCPECAHYFDLSGKAFGSMAISGQADKLRIAGKVPVEYTRVACNYPGVSITFSVDSGSNKNYFATVIEYEDGDGDLKTVELKEALQSANWETMQQSWGAVWKIDKGAPLRAPFSIRLTTIESGKVFVANNVIPAGWNLEAWSNL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00897 216 SUPERFAMILY PHL pollen allergen 122 210 IPR036749 -
Trre13g00897 216 Pfam Expansin C-terminal domain 122 205 IPR007117 -
Trre13g00897 216 Gene3D - 116 213 IPR036749 -
Trre13g00897 216 CDD DPBB_EXPB_N 2 115 - -
Trre13g00897 216 Gene3D - 1 115 IPR036908 -
Trre13g00897 216 SMART dpbb_1 33 110 IPR007112 -
Trre13g00897 216 PRINTS Expansin/Lol pI family signature 103 119 IPR007118 GO:0005576
Trre13g00897 216 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Trre13g00897 216 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Trre13g00897 216 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576
Trre13g00897 216 PRINTS Expansin/Lol pI family signature 162 176 IPR007118 GO:0005576
Trre13g00897 216 SUPERFAMILY Barwin-like endoglucanases 2 119 IPR036908 -
Trre13g00897 216 PANTHER EXPANSIN-B3 2 211 - -
Trre13g00897 216 Pfam Lytic transglycolase 34 110 IPR009009 -
Trre13g00897 216 PRINTS Major pollen allergen Lol pI signature 35 46 IPR005795 GO:0005576|GO:0019953
Trre13g00897 216 PRINTS Major pollen allergen Lol pI signature 55 65 IPR005795 GO:0005576|GO:0019953
Trre13g00897 216 PRINTS Major pollen allergen Lol pI signature 92 107 IPR005795 GO:0005576|GO:0019953
Trre13g00897 216 PRINTS Major pollen allergen Lol pI signature 124 139 IPR005795 GO:0005576|GO:0019953
Trre13g00897 216 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Trre13g00897 216 PRINTS Major pollen allergen Lol pI signature 171 188 IPR005795 GO:0005576|GO:0019953
Trre13g00897 216 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 133 209 IPR007117 -
Trre13g00897 216 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 120 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00897 Trre-Chr13 7303548 7305386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00897 2 209 Expansin Gene Family AT1G65680 57.346 4.27e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00897 - - gmx:100805408 323.553