Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00894 ATGGACAAATATAAGTGCAAACTTTGCTATAGAAGCTTCAACAATGGGAGAGCATTGGGTGGTCACATGAGATCTCACGTGATGAATCTTCTTGTTACGAAACCAGAAGAAGATTCATCACGTACGATTCAACTTAGTTTTGAAGCTGAATCAGCACCATCTTCATCGTCATCGGAAGATGATGATGACGATGAAAAGGGTCTTAGTTATGGCCTTAGAGAAAATCCAAAGAGAAGCATTCGTCTCGTGGATCAAGACTTTTCTTTTCCACAAGTTGATACGAGTTCGGTGATTCTTCAAGATATAGAAAGCGAAACCGAATCATCCAAAAACAACCCAACTCGTAGAAGATCCAAAAGGGTATGGAAAATTCGTGAGTTTGATCAGAAGTATTACGGTGAATCTGCTATTAAGAAAGTTAAATTTTTTAATAAGACAATATCTTCTGTTGTTGAACATGAACCGGTTAGTTCGGTTTCTGATACAACAACCGAAGAAGATGTTGCATTTTGTCTTATGCAATTGTCGAGAGACAATTGGAATAGGCAAAATGAACAATATGAAGAGCCTGAAGAAGACGAAGATGAAGAAGAGCTAGATGATGACGAAGATGAAGACGTTGAAGCTGAAGAAGAGGAAGAAGAAGAAGAAGATGAAATCGAAAGATCTTTAGAAGATAGTGATGAATCTCAAGAGCTAATAAAAGTTAGCAAGAATAACAATAAAGTACGTAAAGGAAGGTACAAATGTGAAACATGTAATAAAGTATTCAAATCTTATCAAGCATTGGGTGGTCATAGAGCAAGTCACAAGAAGATTAAATTAAACATAACAGTCGAAGAATCGCAACAAGAATTCGAAGTTGTGGAAAAGAAAATTCACGAATGCCCGGTTTGTTTTCGAGTATTTAATTCGGGTCAAGCACTTGGTGGACACAAAAGAACACATGTTATTCATGGATCAACAACAACAGTTCCAATTTTTAGTTCAAAAAAAGTTGCAAAAAGTGTTATAGATCTTAATCTTCCTGCTCCAATTGATGATGATGAAGTCAGTCAAATTGAGAATTCTGCTGTTTCAGATGCAGAATTTGTCAAAACTCGTTAG 1107 0.3622 MDKYKCKLCYRSFNNGRALGGHMRSHVMNLLVTKPEEDSSRTIQLSFEAESAPSSSSSEDDDDDEKGLSYGLRENPKRSIRLVDQDFSFPQVDTSSVILQDIESETESSKNNPTRRRSKRVWKIREFDQKYYGESAIKKVKFFNKTISSVVEHEPVSSVSDTTTEEDVAFCLMQLSRDNWNRQNEQYEEPEEDEDEEELDDDEDEDVEAEEEEEEEEDEIERSLEDSDESQELIKVSKNNNKVRKGRYKCETCNKVFKSYQALGGHRASHKKIKLNITVEESQQEFEVVEKKIHECPVCFRVFNSGQALGGHKRTHVIHGSTTTVPIFSSKKVAKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00894 368 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Trre13g00894 368 Gene3D Classic Zinc Finger 245 316 - -
Trre13g00894 368 MobiDBLite consensus disorder prediction 187 226 - -
Trre13g00894 368 SUPERFAMILY beta-beta-alpha zinc fingers 3 28 IPR036236 -
Trre13g00894 368 ProSitePatterns Zinc finger C2H2 type domain signature. 250 270 IPR013087 -
Trre13g00894 368 MobiDBLite consensus disorder prediction 47 71 - -
Trre13g00894 368 Coils Coil 192 230 - -
Trre13g00894 368 SMART c2h2final6 294 316 IPR013087 -
Trre13g00894 368 SMART c2h2final6 4 26 IPR013087 -
Trre13g00894 368 SMART c2h2final6 248 270 IPR013087 -
Trre13g00894 368 SUPERFAMILY beta-beta-alpha zinc fingers 247 316 IPR036236 -
Trre13g00894 368 ProSitePatterns Zinc finger C2H2 type domain signature. 296 316 IPR013087 -
Trre13g00894 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
Trre13g00894 368 MobiDBLite consensus disorder prediction 181 237 - -
Trre13g00894 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 316 IPR013087 -
Trre13g00894 368 Pfam C2H2-type zinc finger 294 316 - -
Trre13g00894 368 Pfam C2H2-type zinc finger 247 272 - -
Trre13g00894 368 Pfam C2H2-type zinc finger 4 26 - -
Trre13g00894 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Trre13g00894 368 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 367 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00894 Trre-Chr13 7284092 7285198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00894 1 354 C2H2 Transcription Factor Family AT3G60580 41.758 1.15e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g00894 zf-C2H2_6 5.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00894 - - tpra:123890030 613.224