Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00886 ATGGACGAGGAAATTCCGGAGAAAGGTTTCGAGTATGAAGTGAGTAGCTGTCAAGTTGAAGTTGAAAATCAAGCCCCGTTACCATCACCTTCTATTCGTACGACAAATATGCAAACGGATGGAATTAAGCCGCTTTCAGGAAAGCCATACTTTCATGTGATTATTTCAAAATCGCATCTCAGACCCCGTTATGCAGTGGGGCCGTCTAGCAATATATGCTCAACACTTCCTTTTGTAGCAGTTCCGACTATTCTCAACTGTCGTGGTAAGAGCTGGGAAATGATTTATAATGGCCAAAAGCAGGGCCAAAACCGATGCAAGCAGTTTGATACTAATGGCTGGGGAAATTTTGTTAAAGATAATAATTTGAAGTTTGGAGACGCATGCGTTTTCGAGCTCATGGAGAACAGTAAAGATAAAATTGTCTTTGAAGTTCAAATTCTTAGAGGTAACCCCCCGTTCGAATTATCTGGAATTGGTGAGAGTAGAGAAGAGCCTATTTTCCTATCCGAATTTCCTGGAACTGGTGAGAGGGATGCACCCTTTGTAATTGACTAG 558 0.4176 MDEEIPEKGFEYEVSSCQVEVENQAPLPSPSIRTTNMQTDGIKPLSGKPYFHVIISKSHLRPRYAVGPSSNICSTLPFVAVPTILNCRGKSWEMIYNGQKQGQNRCKQFDTNGWGNFVKDNNLKFGDACVFELMENSKDKIVFEVQILRGNPPFELSGIGESREEPIFLSEFPGTGERDAPFVID 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00886 185 ProSiteProfiles B3 DNA-binding domain profile. 83 151 IPR003340 GO:0003677
Trre13g00886 185 SMART B3_2 51 151 IPR003340 GO:0003677
Trre13g00886 185 Pfam B3 DNA binding domain 84 144 IPR003340 GO:0003677
Trre13g00886 185 SUPERFAMILY DNA-binding pseudobarrel domain 47 149 IPR015300 -
Trre13g00886 185 CDD B3_DNA 83 149 IPR003340 GO:0003677
Trre13g00886 185 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 40 152 IPR044837 -
Trre13g00886 185 Gene3D - 34 151 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00886 Trre-Chr13 7212035 7218033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00886 84 163 REM Transcription Factor Family AT4G31680 37.037 2.58e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g00886 B3 4.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00886 - - tpra:123884363 289.271