Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00883 ATGAAGGCTATGCCCTTATCTTTTGAAGAATACATAGGAAAAGGGGTGTTAGATTTTGGTTCAAGTGTTGTTGTTGGTTCTTCAGATTCATTGTTTTTTCATCAACAGCAACAAGAACAATTTCTTCAAAGGTTGAGGGAAAATTGTTGTTATGCGGGCATTGAGCCCAACTCTGTTCTTGTTTTTGACCACAAAAAACCAAATCAAGAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGTAGCGCCGCCGGAGGCATCGGCGGTTCAACTGATAGCACAACCGGTGGTGCCGGTACCGCCGCTGCCGCAAATATCAAAAACAATATACTACAACAAAGTGAAGGAAGATGTGGAATGGAAGATTGGGAGAGTGTTTTGTCTGAATCACCAAGTCAAGATCAAGATCATTCAATATTGAAATTGATTATGGAAGATATTGAAGATGCTTCTATGGGATTAAGTAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTTCTTGATCCTATTTCTTCAAATGTTAACAACAATACAAAATTTGTAACTAGTATTGAGAAGTTACCTCAATTTGTTATGAATCAAAAGCAAACTCAGTTTATGCCTAACCCTAGTTCGGTTTTTCCTTTCGCATACTCTCAGCTGCAAGAAAATCAAGAGATTCATCATCAGCCACCAGCTAAAAAACTCAATTGTGGAACTAATTATGAAATTCCAAAGATACCCTTTTTGGATTCTGGTCAAGAGATGTTTCTTAGGAGGCAACAACAACAACAGCAGCAGCAGCAGCAGCTTCAACTGCTTCCGCATCATCTGCAGCAGAGGCCAATGGCGCCTAAGCAGAAAATGGGGAATCCTGGAAGTGGTGGCGGCGAAGATGTGTCGACTCATCAGTTTCAGCAGGCTATAATTGACCAGCTTTACAAAGCTGCAGAACTTATAGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATTGGGAAGCCTTTTCAAAGGGCTGCTTTCTATTTCAAGGAGGCATTATTGCAATTGCTTCAATCAAATGTCAATAATGGTAACAACAACAGTAACTTTTCACCAACCGGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCGGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTAGAAGGTTATGATCGAATTCACATTATAGATTTCGATATTGGTTTTGGTGGACAATGGTCTTCTTTTATGCAGGAGTTAGCACTCAGGAATGGTGGTGCACCTGCACTTAAGATCACTGCATTTGCTTCACCCTTTCACCATGACGAAATCGAGCTTAGTTTCACTCACGAGAATCTGAAACAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAGATTCTGACACTCGAGTCTTTGAATTCTGTTTCATGGCCTCAGCCACTTCGTGATTGCGAAGCAGTTGTTGTTAACTTGCCTATTGGCTCTTTCTCAAATTACCCTTCATACCTTCCTTTGGTGCTTCAATTTGTGAAACAGCTCATGCCGAAAATTGTGGTGACATTGGATAGGAGTTGTGACCAAACTGATGCAGCATTTCCTCAGCATATGATTTATGCACTCCAGTCTTATTCCGGTTTGCTCGAGTCACTTGATGCTGTTGGTGTTAATGTTCACCCGGATGTGCTTCAGATGATCGAGAAATACTATCTTCAACCAGCAGTTGAGAAGCTGGTTTCGGGTCGTCTACGTTCACAGGACCGAACACTTCCTTGGAAAAACCTACTCTTGTCAGCAGGGTTCTCGCCATTGACATTCAGTAACTTTACTGAGTCACAAGCAGAGTGTTTGGTGCAAAGGATTCCTGGTAGGGGATTTCATGTGGAGAAGAAGCAGAATTCACTTGTTTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCGACTTGGAGATGCTGA 2061 0.4168 MKAMPLSFEEYIGKGVLDFGSSVVVGSSDSLFFHQQQQEQFLQRLRENCCYAGIEPNSVLVFDHKKPNQETTPTSSSTLSSSHGSAAGGIGGSTDSTTGGAGTAAAANIKNNILQQSEGRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSSQQDVEFNGFSFMDQQSSVLDPISSNVNNNTKFVTSIEKLPQFVMNQKQTQFMPNPSSVFPFAYSQLQENQEIHHQPPAKKLNCGTNYEIPKIPFLDSGQEMFLRRQQQQQQQQQQLQLLPHHLQQRPMAPKQKMGNPGSGGGEDVSTHQFQQAIIDQLYKAAELIDAGNPELAHGILARLNHQISPIGKPFQRAAFYFKEALLQLLQSNVNNGNNNSNFSPTGLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGYDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFASPFHHDEIELSFTHENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPIGSFSNYPSYLPLVLQFVKQLMPKIVVTLDRSCDQTDAAFPQHMIYALQSYSGLLESLDAVGVNVHPDVLQMIEKYYLQPAVEKLVSGRLRSQDRTLPWKNLLLSAGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00883 686 ProSiteProfiles GRAS family profile. 316 685 IPR005202 -
Trre13g00883 686 MobiDBLite consensus disorder prediction 62 102 - -
Trre13g00883 686 Pfam GRAS domain family 326 685 IPR005202 -
Trre13g00883 686 MobiDBLite consensus disorder prediction 64 102 - -
Trre13g00883 686 MobiDBLite consensus disorder prediction 296 316 - -
Trre13g00883 686 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 277 681 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00883 Trre-Chr13 7172184 7174244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00883 273 686 GRAS Transcription Factor Family AT4G00150 53.477 3.13e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre13g00883 GRAS 3.1e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00883 - - gmx:100805945 823.157