Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00876 ATGTTTAATTGTTCTTCATCACCTAATAATGTTCCTCCTACTTGGCTTCAAAATCTTCTAACTGAGGAGAAATTCTACAACGCTTGTTTAATTCATCAAGAATCAAGGAAAAATGAAAAAAATGTTTATTGTTTGGATTGTTGTATCAGTCTTTGTCCTCACTGTGTTCCACCTCATCGTTCTCACAGACTCTTGCAGATTAGAAGATATGTGTATAATGATGTTATAAGATTAGATGATGCTTCAAAGTTAATTGATTGCTCTTCTATTCAATTCTACAGAACCAACAGTGCAAAAGTGGTTTTTTTGAGGACAAGGCCACTAACAAAGAAAAGCTCTAGCGGCAATAAGTGCATAACATGTACCAGAAGTTTACAAGACCCATATAAATTCTGCTCTCTTGTTTGCAAGGTGAACCACCTTGTGAAAACATTGGGATCACTGTCCGGATACCTTTATGAGTGCAACTACATGCCTTTATCTGACTCTGGACCCGATGATGATCTAATGACACCCGACTCGATTCTCGAACTATCCGCTTCGAACCACACTTCATCCGGTTCGGGTGGATATGGAGTTGTGGATTGTCAAATCACCTTAGCTTGTACCGCAACTACCGAAGTTGTTCGAAAGAAACGAACCGGTCTTTCCACTTTTCGACCACCATGTCGGCCTGTAGGTTCGCTAGTGTCGGAAATCTCAGCTAATATGATTAATAAGAGAAAAGGAAATCCCCGGAGAGCTCCACTATATTGA 756 0.3981 MFNCSSSPNNVPPTWLQNLLTEEKFYNACLIHQESRKNEKNVYCLDCCISLCPHCVPPHRSHRLLQIRRYVYNDVIRLDDASKLIDCSSIQFYRTNSAKVVFLRTRPLTKKSSSGNKCITCTRSLQDPYKFCSLVCKVNHLVKTLGSLSGYLYECNYMPLSDSGPDDDLMTPDSILELSASNHTSSGSGGYGVVDCQITLACTATTEVVRKKRTGLSTFRPPCRPVGSLVSEISANMINKRKGNPRRAPLY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00876 251 CDD Bbox2 29 67 - -
Trre13g00876 251 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 250 - -
Trre13g00876 251 ProSiteProfiles Zinc finger B-box type profile. 24 67 IPR000315 GO:0008270
Trre13g00876 251 Pfam PLATZ transcription factor 68 138 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00876 Trre-Chr13 7127115 7129327 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre13g00876 PLATZ 5.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00876 - - mtr:120577171 386.726