Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00873 ATGGGCATGAAAATGAATATGGTTGATAGTTGTTGGAGGCCAAATCCTGAATGGAGGAGGCATAGACAACAACTAGCGACTTGCTCCGTAGGCTATGTTGGAAAGATGACAAACAACATCGGTAACGACCTCATACATTATAAAGTTACTGACCCAAATGATGATCCCACAAATCCTAAACCTGGTACGTTGAGATACGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGACATGAATATTAGACTCATGAAACCCCTTCTCATTAGTAATTTCACTACAATTGATGGTCGCGGCGTCAATGTCCACATTGCTAATAATGCATGCTTGATGATATCCAAGGCCACCAACATAATAATTCATAGCCTTAGAATCCATCACTGCAAAGCTCAAGCGTCGGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCCAGTAGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAAATTTGGATCGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACTAATGTCACTATATCCAATAACTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGACGACGGGTATGTGAGAGACAAAAACATGAAGGTTACCGTTGTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCTAGGATTTGCCATGGATATGCACATGTAGTCAACAATCTTTACTTTGGATGGATGCAATATGCCATTGGTGGAAGTATGGGGCCTAGTCTCAAAAGTGAGGCAAACCTCTTCATAGCACCAAAAGTTGGGAGTAAAGAGGTAACATGGAGAAAAATTGGTAACACAAATGGGGATAAATGGGAATTTCATTCTGTAAGGGATGCATTTGAAAATAGAGCCTCATTTGCGGTAACAAAAGGGGGACGTGTGCCAAAGCCAAATTATAAAAAAGAGCAAAATTTTAAAGTTGTTGATGTCAAATCTGTTAGATCATTAACAAGATCAGCAGGTGCATTTCAATGCAGTAGAACATCTATATGTTGA 1071 0.3978 MGMKMNMVDSCWRPNPEWRRHRQQLATCSVGYVGKMTNNIGNDLIHYKVTDPNDDPTNPKPGTLRYGASVIQGKVWITFQKDMNIRLMKPLLISNFTTIDGRGVNVHIANNACLMISKATNIIIHSLRIHHCKAQASGMVMGPNGKVIHLGPVDGDAIRLVTASKIWIDHNTLYECEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRICHGYAHVVNNLYFGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKIGNTNGDKWEFHSVRDAFENRASFAVTKGGRVPKPNYKKEQNFKVVDVKSVRSLTRSAGAFQCSRTSIC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00873 356 PANTHER PECTATE LYASE 18-RELATED 3 352 IPR045032 GO:0030570
Trre13g00873 356 Pfam Pectate lyase 95 273 IPR002022 -
Trre13g00873 356 Gene3D - 5 349 IPR012334 -
Trre13g00873 356 SMART amb_all 82 279 IPR002022 -
Trre13g00873 356 PRINTS Pollen allergen Amb family signature 296 320 IPR018082 -
Trre13g00873 356 PRINTS Pollen allergen Amb family signature 327 350 IPR018082 -
Trre13g00873 356 PRINTS Pollen allergen Amb family signature 256 275 IPR018082 -
Trre13g00873 356 PRINTS Pollen allergen Amb family signature 53 78 IPR018082 -
Trre13g00873 356 PRINTS Pollen allergen Amb family signature 234 253 IPR018082 -
Trre13g00873 356 PRINTS Pollen allergen Amb family signature 154 175 IPR018082 -
Trre13g00873 356 PRINTS Pollen allergen Amb family signature 90 106 IPR018082 -
Trre13g00873 356 SUPERFAMILY Pectin lyase-like 3 349 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00873 Trre-Chr13 7080765 7082327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00873 36 283 Polysaccharide Lyase AT5G09280 71.371 1.05e-138 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00873 K01728 - gmx:100780437 622.083