Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00871 ATGGCGAAGATTCACGGATTTAAGCTCCGGAGGCGCTTTGTCCGGTTTTCTAGATATGTCTTTAAAAACAAACGAATATTCCGAACTAGATATCATCGCTTTGATTGTCCTTCCGAGTCACCAACACTAAAGATTCTCAAGTGGGGTCGTAAGCTTACAGAAGGCGCCATGTCACTTTTTAACAAGTCGGGTTATGCCCGGTTAGGATCTGACTCAAAATTCAGCGTGCCGAAGGGACACATGGTTGTGTATGTGGGACGGAAAGAGGAAGAGATAAATAGGGTTATGGTGCCGGTGATATACTTTAACCATCCGTTGTTTGGTGAATTGCTTAGACAAGTTGAGGAGGAGTATGGGTTCAACCACCAAGGGGGAATCACGATACCATGCCGGTTCACAGAGTTTGAACGGGTCAAGACATGGATTGCTTCAGGATCCGATAATTGCACCGGTCGAAAATTGGATTTGAAGACGTGA 477 0.4528 MAKIHGFKLRRRFVRFSRYVFKNKRIFRTRYHRFDCPSESPTLKILKWGRKLTEGAMSLFNKSGYARLGSDSKFSVPKGHMVVYVGRKEEEINRVMVPVIYFNHPLFGELLRQVEEEYGFNHQGGITIPCRFTEFERVKTWIASGSDNCTGRKLDLKT 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00871 158 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 64 137 IPR003676 GO:0009733
Trre13g00871 158 Pfam Auxin responsive protein 67 139 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00871 Trre-Chr13 7075323 7075799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00871 75 135 Calmodulin-binding Proteins AT3G43120 47.541 9.23e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00871 K14488 - mtr:25480991 242.662