Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00869 ATGGCACCTCTATACCTAACGATCGTGATCATTTTTCTCTCTATCTCTTCATCTCTTGCAAGAGTCGAGCCATCTTTGGCTCGACATAAGTTGCAAAAATCCTCAAACCAAACAAAAACTGAAATAGAAACCCAAGCCCAAACACGCAACAAAACACTGGCATACATAGAGTCATCGTGCCAAGGAACAAGGTACCCAGATCTATGCATGCGGTCCTTAGCCTCTTTTGCCAAATACTCCACCATAGCCGGACCTGACCACTTAGCCCACATAGCCCTATCTGTTAGCCTCGTCAAAGCACTTCAAACAAGAGGTTACTTACTAAAGGTAGTTAAAGAAATTGAAGAAATCAACAAGGGTACCGAGCCCGGTCTTGCATACTTAACTATGCAAGATTGCGAAAAACAAATCAGCGATAGTGTTGATCAACTTAGCCAAGCTATTAAGGAGCTTCGTCGGGTGAACAAAGGTACAATTATTGATGATAAGATGTTGTGGCATATAAGTAACGTCGAGACATGGGTGAGTACTGCTTTAACCGATGCTAGCTATTGCGTGCAATCGTTTCCCGGTCATAGGATGAGTAAGAGGACTGCTACTATAAAGAGTAAGGCACAAAATGTTGCTGAGGTTACTAGTAATGGTCTTGCCTTGTTTCATAGATATGCTGCTAGGTACAAAGCAGCAGCTGCTGCTAGAGCTGCCAAGAGACCATAA 717 0.431 MAPLYLTIVIIFLSISSSLARVEPSLARHKLQKSSNQTKTEIETQAQTRNKTLAYIESSCQGTRYPDLCMRSLASFAKYSTIAGPDHLAHIALSVSLVKALQTRGYLLKVVKEIEEINKGTEPGLAYLTMQDCEKQISDSVDQLSQAIKELRRVNKGTIIDDKMLWHISNVETWVSTALTDASYCVQSFPGHRMSKRTATIKSKAQNVAEVTSNGLALFHRYAARYKAAAAARAAKRP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00869 238 SMART PMEI_2 51 218 IPR006501 GO:0004857
Trre13g00869 238 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 222 IPR035513 -
Trre13g00869 238 NCBIfam pectinesterase inhibitor domain 46 221 IPR006501 GO:0004857
Trre13g00869 238 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 218 - -
Trre13g00869 238 CDD PMEI-like_3 58 220 - -
Trre13g00869 238 FunFam Pectinesterase inhibitor 3 51 223 - -
Trre13g00869 238 Coils Coil 130 150 - -
Trre13g00869 238 Pfam Plant invertase/pectin methylesterase inhibitor 55 218 IPR006501 GO:0004857
Trre13g00869 238 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 221 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00869 Trre-Chr13 7068371 7069087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00869 56 219 Carbohydrate Esterase AT3G49220 26.946 2.12e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00869 - - tpra:123890145 402.134