Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00863 ATGTCTTATCTCTTTTTCTTACTCCTAAAGCTACAAATCTTTCTCATATTTTCTTCTCAATCTCTTTCCTTAAACACTGAACTTGACACTTTAATTGCCATCAAACACTCTTTAGACCCAGAAAACCATGTCTTAATATCATGGAACATTCATTCTGATCCATGTAGTGGAACTTTTGAAGGTGTGGCTTGTAATGAACAAGGTTTTGTTACTAATATTTCACTTCAAGGAAAAGGTTTATCTGGTAAATTACCATCAGTGATTGGTAATCTTAAGAGTTTAACTGGTCTTTATCTTCATTTCAATGCCTTAAATGGGAATTTACCAAAGGAAATTGCAGGATTAACTCAGCTTAGTGATTTGTATCTTAATGTTAATAATTTCTCTGGTTTTATCCCTCATGAGATTGGTAACATGTCAAATCTTCAAGTTTTGCAGCTTTGTTATAATGAGCTTAATGGAAGTATACCAACCGAGCTAGGAAAATTAAAGCGGCTAAGCGTTCTTGCGCTCCAATATAATCACTTCAGTGGCGCGATTCCTGCAAGTTTGGGTGAGCTAGAGACACTAGAAAGATTGGATCTCAGCTTCAATAGTCTTTTTGGTCCACTTCCAGTGACATTAACTTATCCACCTAAACTACAGACTCTCGATATTCGAAACAATTCACTCTCTGGCAGTGTCCCTGCAGCACTGCAAAGACTGAAAGGAGGGTTACAGTATTCTAACAATCATGGTCTATGTGGAACTGGATTTGCCGATTTAGATTCTTGTCAAATAGTAAGTAATTCGGATCCAATTAGACCAGAACCATATGAACCAAGTAAAAATTCAACAATTGGTTTTCCAGTATCACCTGAAGTAATGGCTAAAAAATGTGGAGAAGCTGGTTGTAGAAAGCGGTCAGAATCTTCGACAGTTGGTGTGGTTTTTGTGGTGATTGGCGTTGTTGTTGGTTCTTCGGTTACTGGACTTTTTCTGATCTTGCGGTACCGTCGTGAAAAACAGAAAATCGGAAACACTGCTGAAATTTCTAATATTCCGCTTAGTACTGACAAGATCAAGGAAGTCTACAGGAAAAACGTGTCGCCACTTATAAGTTTGGAGTATTCCAATGGATGGGATCCATTATCCAAAGATCTCGGTGGTTATTCACAGGAATTTCTCCAGAGTTTTATGTTTAATCTCGAAGAAGTAGATCGCGCAACTCAATGTTTCTCAGAGATGAATTTATTGGTGAAGAATAATATATCAGCTAACTATAGAGGAATCTTGAGAGATGGATCTGTTGTGGTTATAAAGTGCATTGCCAAGACAAGCTGCAAGTCTGATGAAACTGAATTCTTGAAAGGTTTGAAATTATTAACTTCATTAAAGCACGGAAATCTTGTTCGGTTAAGAGGCTTTTGTTGTTCGAAAGGCCGCGGAGAATGTTTTCTGGTTTATGATTTTGTGTCAAATGGAAGTTTGTCAAAGTATCTTGATGTTAAAAGAGGAAGTGCTGAGGTACTTGAATGGTCCACTAGAGTGTCCATAATCCATGGTATTGCAAAAGGTATTGGTTATCTGCATGGAAGCAAAGGAAGCAAACATTCTCTAGTTCATCAGAATATATCGGCTGAAAAAGTACTTCTCGATTATCGATACAATTCCTTACTTGCAGATTCAGGATTGTACAAACTCCTTGCAGACGATGTTGTTTTCTCCACCCTCAAAGCTAGTGCTGCTATGGGATACCTAGCGCCCGAGTACACAACAACTGGTCGTTTCACTGAAAAGAGTGACGTGTACGCTTTTGGTGTGATAGTTTTCCAACTTCTCACTGGAAAACATGATATCACTCAGTTAAGTCGACAATCCTTAGAAACTGGTGGTTTGAAAGATATCATTGATGAGAATCTTGAAGGGAAGTTCTTAGAATCAGAGGCAGAGAAATTGGCGCGACTCGCTTTGGTTTGCACCGATGAATCTCCTCATCTCCGACCGACTATGGAGAATGTAATGGTAGAATTGAGTAATAAGTGGTAA 2028 0.3836 MSYLFFLLLKLQIFLIFSSQSLSLNTELDTLIAIKHSLDPENHVLISWNIHSDPCSGTFEGVACNEQGFVTNISLQGKGLSGKLPSVIGNLKSLTGLYLHFNALNGNLPKEIAGLTQLSDLYLNVNNFSGFIPHEIGNMSNLQVLQLCYNELNGSIPTELGKLKRLSVLALQYNHFSGAIPASLGELETLERLDLSFNSLFGPLPVTLTYPPKLQTLDIRNNSLSGSVPAALQRLKGGLQYSNNHGLCGTGFADLDSCQIVSNSDPIRPEPYEPSKNSTIGFPVSPEVMAKKCGEAGCRKRSESSTVGVVFVVIGVVVGSSVTGLFLILRYRREKQKIGNTAEISNIPLSTDKIKEVYRKNVSPLISLEYSNGWDPLSKDLGGYSQEFLQSFMFNLEEVDRATQCFSEMNLLVKNNISANYRGILRDGSVVVIKCIAKTSCKSDETEFLKGLKLLTSLKHGNLVRLRGFCCSKGRGECFLVYDFVSNGSLSKYLDVKRGSAEVLEWSTRVSIIHGIAKGIGYLHGSKGSKHSLVHQNISAEKVLLDYRYNSLLADSGLYKLLADDVVFSTLKASAAMGYLAPEYTTTGRFTEKSDVYAFGVIVFQLLTGKHDITQLSRQSLETGGLKDIIDENLEGKFLESEAEKLARLALVCTDESPHLRPTMENVMVELSNKW 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00863 675 Pfam Protein tyrosine and serine/threonine kinase 429 670 IPR001245 GO:0004672|GO:0006468
Trre13g00863 675 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Trre13g00863 675 ProSiteProfiles Protein kinase domain profile. 406 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00863 675 FunFam Leucine-rich repeat receptor-like kinase 26 135 - -
Trre13g00863 675 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515
Trre13g00863 675 Gene3D Transferase(Phosphotransferase) domain 1 485 674 - -
Trre13g00863 675 SUPERFAMILY L domain-like 26 236 - -
Trre13g00863 675 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Trre13g00863 675 FunFam Protein NSP-INTERACTING KINASE 2 485 675 - -
Trre13g00863 675 FunFam Protein NSP-INTERACTING KINASE 2 377 484 - -
Trre13g00863 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 142 672 IPR046959 -
Trre13g00863 675 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Trre13g00863 675 Gene3D Phosphorylase Kinase; domain 1 382 484 - -
Trre13g00863 675 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Trre13g00863 675 Gene3D Ribonuclease Inhibitor 181 247 IPR032675 -
Trre13g00863 675 SUPERFAMILY Protein kinase-like (PK-like) 383 671 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00863 Trre-Chr13 6956149 6960010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00863 7 519 Miscellaneous Gene Families AT4G22730 51.233 5.07e-174 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre13g00863 PK_Tyr_Ser-Thr 3.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00863 - - qsu:111997683 882.093