Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00845 ATGGAACCACAACCACAGAAGATTTCAGGAGGAGCAGAAACACTTAAACATATGGCTCATGGGTCGTCGGTTTCTATTGCATATCACCCAAATTTTGGACCTCATGATGACCTTATCATTTTAGAGCTGGATGAGAAACTGGTCCCAGATGTTTTGAATGAAAGGATGGTCTTAAGAGGACAGCCTGATGAAGATGCAGTTCTTTGTACTCAATCAAAAACATATGCTATGAAGTTTGTTGGAACTTCGAATTCAGTTTTGCTTGTACCACCGGCAAATCAATCAGAATCATATGAAAATCTACAGACAAATGATAGTAATAATAGTGATGACAAAGTTGTTGCAAATGTAATAAAAGTCGTACCTGGTAATATGGAGCTTATTGAGGTTTCACCCAGACTTGATAAACTTAGATTGCTTCTTTCAGAGAACACTTACAGATTTGATGAGAATGACATGGAAACTTTAGAAGATAATCAGGAATCTAAAACAGGATTATATAGCTGGAATGATCTTATAGATAATATCCAAGCTAGTGACGAGGAATTAAGGCTTGGATTGCAGGCTCTTTCCGCTGTGGAGATTAATGGGTATTGGAGATTAGTTGATGAGAGTTACATGGACATGATTCTGGGAATGCTTTTGAAAAATGCAGTGTTGAATGATTGGTCACTCAATGCTCTAAATGAAGATGAAGTCGTGAATATGCTGGAATCAGACGGATTTCCGTTGGTACTTGCAAGGCATTGCTTGCATGTATATGGCAAGCAAGTAAAAGAAAATGATTGCATTGAAAGCTGTGTGTGGAAGTTGGATGAAAAGCGGGTATGCATACACTTTGCAAGAGAAATTCTGAAAGGAGGTAAGAGGAAGTTAGAGAGTTTTATGGATGAATGGAGGAACAAGACTCCAGATGAAATGCATCCAACTTTTGATCTTATGGAAGGAGAAGTATTGACAGAGAAAATTGGAGTTGAGACATGGGTCCGTGCCTTCCGTGTGTCTTCCTTGCCTTCCACTCCAGCTGAACGTTTCTCCATTCTTTTCAGAGAGCGTGCAAAATGGGATTGGAAAGATCTGCAGCCCTATATCAGGGATCTGAATGTACCTGGTCTTTCTGCAGAAGGTATACTACTCAAATACACTCGAAAGACACAACCATCGCCTAATGAAGATCCAGTTTTCAGTGCAAGATAG 1197 0.3952 MEPQPQKISGGAETLKHMAHGSSVSIAYHPNFGPHDDLIILELDEKLVPDVLNERMVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANQSESYENLQTNDSNNSDDKVVANVIKVVPGNMELIEVSPRLDKLRLLLSENTYRFDENDMETLEDNQESKTGLYSWNDLIDNIQASDEELRLGLQALSAVEINGYWRLVDESYMDMILGMLLKNAVLNDWSLNALNEDEVVNMLESDGFPLVLARHCLHVYGKQVKENDCIESCVWKLDEKRVCIHFAREILKGGKRKLESFMDEWRNKTPDEMHPTFDLMEGEVLTEKIGVETWVRAFRVSSLPSTPAERFSILFRERAKWDWKDLQPYIRDLNVPGLSAEGILLKYTRKTQPSPNEDPVFSAR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00845 398 Pfam Sister chromatid cohesion protein Dcc1 40 364 IPR019128 GO:0007064|GO:0031390
Trre13g00845 398 PANTHER SISTER CHROMATID COHESION PROTEIN DCC1-RELATED 9 398 IPR019128 GO:0007064|GO:0031390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00845 Trre-Chr13 6778850 6780899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00845 10 398 C3H Transcription Factor Family AT2G44580 55.696 1.45e-158 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00845 K11271 - gmx:100817511 645.58