Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00842 ATGGCAGCTGAAATAAGCAGTAGTAGTACGATGAAAGCATGGACTTACTCAGAATATGGCCATGCTGTTGATGTTCTCAAATTTGATCCAAACGTGGCTTTACCTGATGTTAAAGATGATCAAGTGCTTATCAAAGTTGCTGCTGCTTCCCTTAATCCCATTGATTATAAAAGAATGGCAGGTGGCTTTAAAGCCACTGACTCCCCTTTACCAACTGCTCCAGGGTATGATGTAGCTGGAGTTGTGGTTAAGGTAGGGAGTCAAGTGAAGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGTGAAAGCTTTGGAACTTCCAAAGGTGTTTGGTTCACTGGCTGAGTATACTGCTGCAGAAGAGATACTGTTGGCACACAAGCCGAAAAATTTAAGTTTTGCCGAAGCTGCTAGTCTTCCTTTAACAATTGAGACTGCTTATGTAGGCCTTGATTTAACTGGCTTCTCTGCTGGTCAATCCATACTTGTGCTTGGTGGTGCTGGTGGAGTTGGAACCCATATCATTCAGCTTGCCAAGCATGTCTTTGGCGCTTCCAGGGTAGCAGCTACATCTAGCACCAAGAAACTAGAACTGTTGAGCAAGTTAGGAGCTGATTTACCTATCGATTACACAAAGGAGAACTTCGAAGACCTGCCTGAAAAGTTTGATGTGGTATATGACACAGTAGGCGAAACTGAGAAGGCATTCAAGGCTCTAAAAGAAGGCGGTAAAGTTGTGACAATTGTACCACCAGGATTTCCACCATCGATATTTTTCATACTCCCTTCAAATGGTGCTATCTTAGAGAAACTAAATCCTTACTTGGAGAGTGGAAAGGTGAAGCCAGTGCTTGACCCTAAGAGTCCATTTCCATTTTCTCAATCTGTCGAAGCATTTTCCTATCTGGAAACTGGTAGAGTTACTGGAAAAGTGGTTATCCATCCCATACCATGA 963 0.4258 MAAEISSSSTMKAWTYSEYGHAVDVLKFDPNVALPDVKDDQVLIKVAAASLNPIDYKRMAGGFKATDSPLPTAPGYDVAGVVVKVGSQVKKFKVGDEVYGDINVKALELPKVFGSLAEYTAAEEILLAHKPKNLSFAEAASLPLTIETAYVGLDLTGFSAGQSILVLGGAGGVGTHIIQLAKHVFGASRVAATSSTKKLELLSKLGADLPIDYTKENFEDLPEKFDVVYDTVGETEKAFKALKEGGKVVTIVPPGFPPSIFFILPSNGAILEKLNPYLESGKVKPVLDPKSPFPFSQSVEAFSYLETGRVTGKVVIHPIP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00842 320 Gene3D - 153 267 - -
Trre13g00842 320 Gene3D - 18 316 - -
Trre13g00842 320 CDD MDR_like_2 11 316 - -
Trre13g00842 320 Pfam Zinc-binding dehydrogenase 205 316 - -
Trre13g00842 320 Pfam Alcohol dehydrogenase GroES-like domain 40 105 IPR013154 -
Trre13g00842 320 SUPERFAMILY GroES-like 9 168 IPR011032 -
Trre13g00842 320 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Trre13g00842 320 SMART PKS_ER_names_mod 21 316 IPR020843 GO:0016491
Trre13g00842 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 4 320 IPR044626 GO:0016628
Trre13g00842 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 260 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00842 Trre-Chr13 6756293 6759028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00842 71 257 Monolignol Biosynthesis Gene Families AT4G37980 25.688 5.45e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00842 K18980 - gmx:100817947 503.056