Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00841 ATGGGAGTTCACGGTCTCTGGGAACTACTTTCCCCCGTCGGTCGCCGTGTCAACGTCGAAACCCTCGCCGGAAAAACACTCGCCGTCGACGCGAGCATATGGATGGTACAGTTTATCAAAGCGATGCGTGATGACAAAGGCGAAATGGTTCGCAACGCTCATTTGCTTGGATTCTTCCGTCGCATTTGTAAGCTTTTGTTTCTAAGGACTAAGCCTGTTTTTATCTTTGACGGTGGAACCCCTGCCTTGAAGAGACGTACCGTTATTGCTCGCCGGAGACAGCGCGAAAATGCTCAAGCTAAAGTTCGCAAGACTGCCGAGAAATTGCTTCTCAATCAAGTAAAGGCATTGAGGTTAAAGGAACTGGCTGATGATATTAAGAACCAGAGACTGACCCAGAAGAGTGGCACAAAGTCTCGGGAAAAATCTAATCAGGTGGACTTCGTTGGTAGTGATTTAGGAAGAAGTCACACGTCTGCAGCTATACCTGTGGCTAAGAAGGACAAAAATCTACCGCAGACTATAACATCGACAAGTTGCAGTCAAGAGAAGCTTGATGAAATGCTGGCAGCATCTATAGCTGCAGAGGAAAATGGAATCCGATCAAGAGAAGCAGTGGCATCTAATGTAATCGATTCTTCAGATGCAGGCGAAGAGACGATACTGCCATCAGACAGTGTGGAAGTTGATTTAGCTGTTTTAGCTGCTTTGCCACACTCAATGCAACGTGATATTCTTGAGCAGCTTAAAGGGAAGAAAGCAGAAGGACTAAAGAAGCAAGTTGACAACCATATAAGACATGATGTCAGTGATTGTGGCAAGGGTAAAGGCACTATTTTCCATGACACTGACATGGTTGGGTGTAGCTCAAGATGTGACGTCAATGTGACATCAAGTAATGACAATCAAAACAGAATTGATGAAATGTTAGCCGCATGTATTAATATGGAGGAAAATGCAAAGTTAGTAAAAAATGTATCAAGTTCAAGTACTCTTGGGGATTCCACCAATAAGGAAAAGGATAGTAACTATGATGAAGATGAAGATGAAGAGATGATACTGCCAGCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTGGACCTCCTTGTTCAGATGAGAGAACGATTGATGGCAGAGAACAGACAAAAGTATCAAAAAGTCAAGAAGGATCCTTCAAAGTTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGTCGTGAGATAAATGAAGTGCAGAAAGCTGCTGTCGGAGGAGGAGTAGGTGGTTTACAGACTTCACGGATTGCATCTGAATCCAACCGAGAGTATATATTCTCGTCATCCTTCTCCGGTGATAAACAAGAACTTACTTCCACCAGATCAGAGAGAAATGTCGAAGATACACAGCAAATAGAACGGGGAACACATCCTTCACAAAATATTGTAAATAACGTAGCAGCAGTAAATGTTTCTAATACTTCAGCTGGATTAGTTTGCAATGAATCAAGTGAGCCTGTTGATGAAAGTATTCACACATTTCTAGATGAGAGGGGTCGATTTCGAGTGAGTAGATCAAGAGCTATGGGGATGCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATCGAGCATGACAGAACATGCGTGAACAAGGCTGATAACATTGAAACAGGGCTGAATACTGAAAATAGTCCATTAGAATGTTCTGGGAATCAGGTTAGTGGTAAAGCACAAGACGTGAATTTTGACTTAATTGGAGAGAATGTGCAAAATGAGAACTTAATGCTTGGCAAGGATACTTCTATAGAGATATCCTTTGAATATGATTCCAAGAATGAATTTGCAAGTGGTGGGGATGATATATTTGCCAGTTTAGTAGGAGGAATATCTATGGATCACTCCCATGCTGATGATACTGTGGTGAAAGTGCTACCTTCTGGTTTTGATTCAGATTGTGATTGGGAAGAAGGAACTGTTCAGGGTGAGAATACCATTTTTTCTGGATATAATAAAGTGGAATTGAAGTCTTCTGTTGCAGGTGGCTATGATGATGACGATGATAATAATGATGAAAGTGAAGAAGAATGGGAAGAAGGGGATTGTAATGCTACTAAAAGTACCTTATTGAGTCCAGCTGAGTCGGAAAAGTTGGCATCAAAAGGGCAATTGGAAGAGGAGTCTGATTTGCAGGAGGCAATTAGGAGAAGTCTCGAGAGTACACAGGATGGGAAACAAAAATCTGTGTCATCTTTAGACAAGCATTCAAGTGCTTATGAGAATAAGCTGGATCCTAATTTAGTTGGTTTTGGCCCAAACCCAGTGGATTTAAATGATAATAAGGAGGGTTCCAATTTTCCAAGGGAAGATCATACCAAACAAAATGAATTACATGAAACTGTAGGAAACAAAAAGGAAAATTATGTGACTAAAAATATCCCGGAAACTTTCCATTTCCACGGAAGTCCGTCAAATTCATTTGTGGCAATTAATTCCAATGACACAGCTACATTGGTTAACGAACCTAGCAAGCTGGCTGGACACGATATTTCTGAAAATTCAATTTCAGATGCAACTGTGATGGGTGAAGTTCCTAAACCTATTGTTGCAAAGGAATTAATGGATAATCATAATGATGGTAAAGCGTCTTTTGGTTGTAACAATTTGTCCAAGGTTGGTGTGACTGAAGAGGAGAAAAATAAATATATTAATGAAACTGAACCATTGAGTAATTCTACCGGCAATACAAATACTGCTATTCTTTCCATGGACTCATCCTTAAAAGGAGCTAAAGAAGACCTTGATATGGAGCTAAAATTGCCTTCAGTTAACCGTGATGGAAATTTGTCCGTGGAAAGGAGTAGTAACCTCTCCCAAGACTCGATGAATGCCCCAAGAGATTTTCCCGTACAATGGGATGAGGTTCGATTGAATGAAGAAATGGACATTCTTGATCGGGAATATATCAACCTAGAAAATGAGCAGAGGAAGTTTGAGCGTAATGCAGAATCCGTTGATAGTGAATTATTCACTGAATGTCAGGAACTACTTCAAATGTTTGGCCTGCCATATATTATTGCTCCTATGGAAGCTGAGGCACAGTGTGCTTACTTGGAACTCTCAAAACTGGTTGATGGTGTTGTGACTGATGACTCTGATGTACTTTTATTTGGGGCACGCAATGTTTACAAGAATATATTTGATGACCGCAAATACGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAAGGTGTAAGCGGGATTGGGATTGTTAATGCTATTGAGGTTATAAGTGCATTCCCGGAGGAAGATGGCTTCGTGAAATTCCGGAAGTGGGTTGAGTCACCAGATCCCACCATCGTTGGAAGGTTGGATGCAAAAAAAGTATCTAAGAAAGGGTCAAAACTTCAAGAAAAGGAGTCTCCTGATTCCATCGACAAAGGAAAGCAAATTTTCATGAATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTTATCTCCACAAGTTGACAAGTCAACTGAGCCTTTCACATGGGGAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGATGGTCTAGCCAGAAAGCAGATGAATTGCTATTACCTGTTTTAAAGCAATACAACAAACGTGAGACTCAACTGCGGTTGGAGGCATTTTACAGTTTCAGTGAAAGATTTGCAAAAATTCGTAGCAAGAGAGTCAAGAAGGCAGTAAAAGGAATTACTGGTAAGCTGCCTTCAGATTTAATAGATGATTCTGCGGAGAACATGTCCAAGGGTATGAAAAATGGGAGAGGAAGTTCTGTTGACCCTGAGGATGACAAATTGGAGACTTCGAAGGAAACGGAGGAAAGTCTTGCAGGTAGGAAGAAATCAAAAGCAAAAGAGTCGACGAAAAGGAAAAATGACAGGGATACTGTTGCTAAACAACATACAAAGAAAAAGAAAATCAATGATGTTTCTTCTTCTACACCTGCTGCATCCGAGGTTGAGAATTTACAGCCATGTATGCAAACAGAAGAAGGGCAACATGATGGTAAGGGATTGACTCGGAATAAAAGTGGTAGTGAGCGTGGTCGTGGAAGAGGTAAAGGTAAAGGTGTAGGAGTAACAAGAGGCAAGGCGAAGAGAACTCGTTTTCAATCATCTGAAACTGAAGCGTCATCTGATAGTAGTGACATTGAGAATCATGACTCAACACTTTCAGAGGTTGTCCGAAGGTCAATGCGATCTCGGAAACCTGTCAACTATTCTTTGGAGGACCTTGAAGTTGAAGATGCAGATGATTCATTTGATCAGACCAATAAGACTGACTTGCCTGGAGAGGTAGTAAAAGAAAAACCATCTTGCATGGATGATGCACATGTAGATGGTTTCAGTGGTGGGAACGAAAGTGGTATGATAGAAATTCCTCTGAAGAATAACTTGCCCACAGACTATCTGGAGCCAGAAACAGATGCTGGTGCAGCAACACCAACGGCTCACCCGTCAGATGGCTATCTTGAAATGGGAGGAGGATTCTGTGTACACGATAGTGAGATGGATAACAACCATGATGCAATTGATGACATGAACATGGCTACTGCAAACTCTCCACCCTGTTCTGAATTTTTAGGCGGAACTGACTGTGATAAAAGTAGTCCTGCTATATTTTCTGGTGCTGAAAAGGCTACAAGTGAGATACAAGATGGAGGGACATCTAAAATATTCAACAAAGTGCCAAATGACCAGCTTCTAAAGGCTCACATAGGGGTCTTGATACCAGAGAATGCTCACACTAGTGAGAGCTCCAAGGTAGCTTTTAGCGCTATGCCGTTTTTGAGGAAAAAAAGGAAGAAATGA 4992 0.4125 MGVHGLWELLSPVGRRVNVETLAGKTLAVDASIWMVQFIKAMRDDKGEMVRNAHLLGFFRRICKLLFLRTKPVFIFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNQVKALRLKELADDIKNQRLTQKSGTKSREKSNQVDFVGSDLGRSHTSAAIPVAKKDKNLPQTITSTSCSQEKLDEMLAASIAAEENGIRSREAVASNVIDSSDAGEETILPSDSVEVDLAVLAALPHSMQRDILEQLKGKKAEGLKKQVDNHIRHDVSDCGKGKGTIFHDTDMVGCSSRCDVNVTSSNDNQNRIDEMLAACINMEENAKLVKNVSSSSTLGDSTNKEKDSNYDEDEDEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQAYLKTVAFRREINEVQKAAVGGGVGGLQTSRIASESNREYIFSSSFSGDKQELTSTRSERNVEDTQQIERGTHPSQNIVNNVAAVNVSNTSAGLVCNESSEPVDESIHTFLDERGRFRVSRSRAMGMRMTRDIQRNLDLMKEIEHDRTCVNKADNIETGLNTENSPLECSGNQVSGKAQDVNFDLIGENVQNENLMLGKDTSIEISFEYDSKNEFASGGDDIFASLVGGISMDHSHADDTVVKVLPSGFDSDCDWEEGTVQGENTIFSGYNKVELKSSVAGGYDDDDDNNDESEEEWEEGDCNATKSTLLSPAESEKLASKGQLEEESDLQEAIRRSLESTQDGKQKSVSSLDKHSSAYENKLDPNLVGFGPNPVDLNDNKEGSNFPREDHTKQNELHETVGNKKENYVTKNIPETFHFHGSPSNSFVAINSNDTATLVNEPSKLAGHDISENSISDATVMGEVPKPIVAKELMDNHNDGKASFGCNNLSKVGVTEEEKNKYINETEPLSNSTGNTNTAILSMDSSLKGAKEDLDMELKLPSVNRDGNLSVERSSNLSQDSMNAPRDFPVQWDEVRLNEEMDILDREYINLENEQRKFERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVLLFGARNVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVISAFPEEDGFVKFRKWVESPDPTIVGRLDAKKVSKKGSKLQEKESPDSIDKGKQIFMNKHRNVSKNWHIPSSFPSETVISAYLSPQVDKSTEPFTWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKRETQLRLEAFYSFSERFAKIRSKRVKKAVKGITGKLPSDLIDDSAENMSKGMKNGRGSSVDPEDDKLETSKETEESLAGRKKSKAKESTKRKNDRDTVAKQHTKKKKINDVSSSTPAASEVENLQPCMQTEEGQHDGKGLTRNKSGSERGRGRGKGKGVGVTRGKAKRTRFQSSETEASSDSSDIENHDSTLSEVVRRSMRSRKPVNYSLEDLEVEDADDSFDQTNKTDLPGEVVKEKPSCMDDAHVDGFSGGNESGMIEIPLKNNLPTDYLEPETDAGAATPTAHPSDGYLEMGGGFCVHDSEMDNNHDAIDDMNMATANSPPCSEFLGGTDCDKSSPAIFSGAEKATSEIQDGGTSKIFNKVPNDQLLKAHIGVLIPENAHTSESSKVAFSAMPFLRKKRKK 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00841 1663 FunFam DNA repair protein UVH3 1096 1153 - -
Trre13g00841 1663 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Trre13g00841 1663 MobiDBLite consensus disorder prediction 728 751 - -
Trre13g00841 1663 CDD H3TH_XPG 1099 1216 - -
Trre13g00841 1663 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Trre13g00841 1663 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Trre13g00841 1663 Gene3D - 975 1095 - -
Trre13g00841 1663 SMART xpgineu 1027 1096 IPR006086 GO:0004518
Trre13g00841 1663 CDD PIN_XPG_RAD2 1013 1255 - -
Trre13g00841 1663 MobiDBLite consensus disorder prediction 1369 1389 - -
Trre13g00841 1663 MobiDBLite consensus disorder prediction 325 349 - -
Trre13g00841 1663 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 251 - -
Trre13g00841 1663 Coils Coil 983 1017 - -
Trre13g00841 1663 MobiDBLite consensus disorder prediction 687 799 - -
Trre13g00841 1663 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1096 1279 IPR036279 -
Trre13g00841 1663 SMART xpgn3 1 98 IPR006085 GO:0004518
Trre13g00841 1663 ProSitePatterns XPG protein signature 2. 1030 1044 IPR019974 GO:0016788
Trre13g00841 1663 CDD PIN_XPG_RAD2 2 92 - -
Trre13g00841 1663 MobiDBLite consensus disorder prediction 1394 1414 - -
Trre13g00841 1663 MobiDBLite consensus disorder prediction 1295 1463 - -
Trre13g00841 1663 MobiDBLite consensus disorder prediction 1440 1463 - -
Trre13g00841 1663 Pfam Ubiquitin binding region 227 248 IPR025527 -
Trre13g00841 1663 Pfam Ubiquitin binding region 359 386 IPR025527 -
Trre13g00841 1663 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Trre13g00841 1663 FunFam DNA repair protein UVH3 977 1095 - -
Trre13g00841 1663 Gene3D - 1 147 - -
Trre13g00841 1663 Pfam XPG I-region 1030 1111 IPR006086 GO:0004518
Trre13g00841 1663 MobiDBLite consensus disorder prediction 693 708 - -
Trre13g00841 1663 Gene3D - 1096 1185 - -
Trre13g00841 1663 MobiDBLite consensus disorder prediction 1316 1368 - -
Trre13g00841 1663 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Trre13g00841 1663 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Trre13g00841 1663 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Trre13g00841 1663 FunFam DNA repair protein UVH3 1 146 - -
Trre13g00841 1663 SUPERFAMILY PIN domain-like 2 1111 IPR029060 -
Trre13g00841 1663 SMART HhH_4 1098 1131 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00841 Trre-Chr13 6738928 6754799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00841 1006 1148 Core DNA Replication Machinery Family AT5G26680 31.902 6.85e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00841 K10846 - gmx:100820295 1934.84