Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00840 ATGCTTTCTCTCCAATTCACCATCCACCCTCTTCCTCCATCTCAACTCACCACCACCACCAACATTTCTTCCTTCTCTTCCACCTCACTCTCCTTCTTCAACAACCACCACCTTCTTCGCTACAATGTCAAAACCCTAAAAAACCACAGAATTCTCGCAATGTCTACCAATAATAACTCTGCATTCAAAATGAACCTCAACGAGTATCTCGTCACTCTCGAGAAACCACTCGGAATTCGATTCGCTCTTACCTCCGATGGGAAAATCATTGTTCACTCTCTCGCTAAAGGGGGTAACGCGGAGAAGTCTAGGATAATTATGGTGGGTGATACTTTGAAGAAAGCCGGTGATTCGTCGCGGAATAGTCTTGTTGAGATTAAAGATGTTGGAGATACACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCTGCATCTACATTTCCCATTCAACTACTGCATAATAAGATGAATGATCTTGAAATAGTGTATAATAGAGGTCGAGTTCCTGTTGTCACATGGAACAAGACACTATTAGCATCAAATTTACAGCCATCTAGTGAGAGCTCTGGGAATTCTGGATTTTCGATGTTCAACTCAAAGTTTCTTAATTCAAATGGAAGCAAGTTATTGGGCAATCAAAATCAGCATGCCATCACCCATGGTGAAAGAAATTCATTTACTGAACAAACGATACAACTTGCTTGCGTTTTCTCTGAAGAAGCATCTGGAGATGGAGATTGGGCTCATGGAAGTTTTCCACTTGAAGAATATATCAAGGCTCTAGATCGTTCCAAGGATGAGATGTACTATAATCACTCTCTTGGTATGCGTTATAGTAAGATTACCGAGCAAATATATGTGGGATCTTGTATACAAACAGATGAAGATGTGGAAACCTTGTCAAAAGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGGCGCTTGTCAAAGGAATAATATTCTCATCATCAACTACCCGATACGGGATGGGGATTCTTATGACATGAGAAAAAAACTCCCATTTTGTGTTGGGCTTTTATTACGGTTGCTAAGAAAGAATCTCCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATATCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACCTGGGTCACTGGGATGCACACATGCAGGCCTGACAGGCCGGCAATTGCATGGGCGACATGGGATCTCATAGCTATGGCTGAAAGGGGCGAACATGATGGTCCTCCCACACATGCTGTAACATTTGTATGGAATGGTCACGAGGGAGAGGATGTCAATTTGGTTGGAGACTTTACTGGAAATTGGAAAGAACCAGTTAAGGCAAAGCATCGGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACATCTTCACCAGCTGAAAGGGATGATAGCGGAAATGTTAACAATATAATCATGATCGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAACAAAAAGATGCCAATGTTGTAAAGGTGATCGAAAGACCTTTGAATGAAAAAGAGCGGTTTATGTTGGCGAAAGCTGCTCGTTGTATTGCTTTCTCCATCTGTCCTGTCAGATTAGCTCCCAAATAG 1755 0.4188 MLSLQFTIHPLPPSQLTTTTNISSFSSTSLSFFNNHHLLRYNVKTLKNHRILAMSTNNNSAFKMNLNEYLVTLEKPLGIRFALTSDGKIIVHSLAKGGNAEKSRIIMVGDTLKKAGDSSRNSLVEIKDVGDTQKVLKEQTSSFSLVLERPASTFPIQLLHNKMNDLEIVYNRGRVPVVTWNKTLLASNLQPSSESSGNSGFSMFNSKFLNSNGSKLLGNQNQHAITHGERNSFTEQTIQLACVFSEEASGDGDWAHGSFPLEEYIKALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTDEDVETLSKVEGITAVLNFQSGTEAENWGINVKSINGACQRNNILIINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMAERGEHDGPPTHAVTFVWNGHEGEDVNLVGDFTGNWKEPVKAKHRGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTSSPAERDDSGNVNNIIMIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPVRLAPK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00840 584 ProSiteProfiles PDZ domain profile. 70 151 IPR001478 GO:0005515
Trre13g00840 584 ProSiteProfiles Dual specificity protein phosphatase domain profile. 284 443 IPR020422 GO:0006470|GO:0008138
Trre13g00840 584 Pfam Dual specificity phosphatase, catalytic domain 305 414 IPR000340 GO:0008138|GO:0016311
Trre13g00840 584 Gene3D Protein tyrosine phosphatase superfamily 277 543 IPR029021 -
Trre13g00840 584 SUPERFAMILY E set domains 448 531 IPR014756 -
Trre13g00840 584 Gene3D Immunoglobulins 438 534 IPR013783 -
Trre13g00840 584 CDD E_set_AMPKbeta_like_N 451 530 - -
Trre13g00840 584 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 33 582 - -
Trre13g00840 584 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 274 417 IPR029021 -
Trre13g00840 584 CDD DSP_laforin-like 283 429 IPR045204 GO:0019203
Trre13g00840 584 SUPERFAMILY PDZ domain-like 72 158 IPR036034 GO:0005515
Trre13g00840 584 Pfam Glycogen recognition site of AMP-activated protein kinase 451 532 IPR032640 -
Trre13g00840 584 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 277 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00840 Trre-Chr13 6723426 6731270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00840 135 584 Protein tyrosine phosphatase (PTP) family AT3G01510 68.444 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00840 - - mtr:25498007 1073.15