Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00838 ATGCCTCCAAAGAAGAAACTCAACACTTCATCATCTTCCAAAAAACCCAATCCACAACCTTCCAAATACGGTATTCAACACTTCTTCGATCGTCACGCAACTCAACAACAATCTCAGAAACTTCAATCTAACAATTCAACCTCTCAGGCTGTTGCTTCCGATTCTCTTCCACCGCCGGGAAAACCTAAAGACGCCGATGCTCCGTCAGGTGCATCTTTGCAGGGCAGTACACCTAATGATTCAGTGTTACCGGCGGTCACTGATGTTACAGATAACCTCTCTGAGGTGTCTCCGGAGATTTCTAAGTCTATGTCGCGCAAACGTTTCAAATTCTCACCTGGAATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGTTTCAAAACACACGCCTAAGATAATTCAAGCATTGGCTGATTCTTCGAGGGCCAACATGTTGCTAATTCAACGCTGCTCAGAAGATAAGACTTCTCTGGACAAAGGTGCCAAGGTTGAACAGTTGCTTATTACACCAACTCCTAGTGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTGGGCTTGAAAAAATTAAACCCTGACCGAGATGTGGATTTTAATTGCAATCCAACTACTTTGAGCAACTCTTCAGTGTCTGCTGACAGAAATCCCTTCAGAACTCCACCATCTTTGTCTTGTCGCGTAGATAAGCTTGCCAAGGATGCTGAGCACAACGGACCATCTGACCAGCCTTTTTTGAGGCAGCACAAAAAGGTGTTGCTTGAACTTTTAGATCAAGTCGAAGATGCAATTGGTGTTGATAATGATACAGTTTGTGATAAAAACGCACACTCCTTTAAATCGCAAGATGACTTTGCTAACAAGCTCCCCGTCAAAGTTAACCATCTAGCTGAAAGGACAACATCACATATACCTAAAGAAGTTGTTGGTGTTTTCTCCAATTCTAGTTACTTGGTTTTGGAGGTATCTGAAAAATTGCAACCTGCTGCTGAAGGCCCATACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGGGCTGTAAATTTGTGGGATGAATGGTCTTACAGTGTAATTGCCCCTGGAGATACTGTGAATGTAATTGGTCAATTTGATGAAGGGGGAAATTGTGATATTAATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTTGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACCGTCTTAGATGAGAGACTAAAATCCAATGAGCACTCAAGTGTAGCTTTATGTGGAACCTTGCTTCATCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAGACTTCTTAGAATGTTACACAGAAGTGGTTTTACAGAGAAATGTTGAAAGTTTATTTGCATGTGGAGTAAATGAAAAGGATGTTCGCAAAACCATGATTGATGCTATCCCTAGAATATACAGTTGGATTATGCTGTTCAGAAATATGAAGGAAAGAGAAGACCCTAACGTTAATTTTGGATGTGTTAATGGAATGAAGAACGTTGGCATTTCTGAGGCAAGCTCTAATTTGCTATCTTGTGTAATTGATATTGAAGAAATGGCATGGGCACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAGGTTCAATCTAGAAAAGATAAACTAGAGGAGAAGATCATGCCACTAGAGTTCAAAACTGGAAAATCACCTAGTAGCCAGACATCAGTAGAACATAATGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTCTGTATTATCTCCAAACAGATCAGACACATGGCATCACGATTCAAAGATCTGACATAGTTGGGTTGATAATACGTCGTAATGAGCTAGCAAGTGATATTTTGAAGGCGTTAGTACTGCAACAACTTCCACCGGTGTTACAGAGTCCTAGCATGTGCAGAGGCTGCCGCCATCTTAATGTCTGTAGCATTTATCATAAGGCACATGGTGGAAGCATCGAGAGCAATGAATTGGGAGATGTTTTCAGTTCCAATACTAATCACTTGACATCATCTCATTCTAAGTTCCTCTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTTTAAAGAAAGACATGTGGCGATCATATAATTCGGGGACTCGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATGCCATATTCAAAATCTCATGAAAATAATAGTTTCGTTTATCGTTTTGTACCACATGATACTTCTTGCCCCTCTATAGTTTCTGATGATGATCCTTCTAGTGCCTCTGTGAAAAATGATTTAGATCTCACACTGAGAAGTGGTGACTATGTGATATTGAGTAATGAATCAAGCCATCAAACTATTGCAAAAGGGGTGATTTCAGATATTAGTCAGAATCATATATCTGTTTCCTTTTCCAAGCTCTTGAGAATTCCTGGGAGGTCTTCCACGGAACATGATCTCCTTCAGCAAGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCGTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTCCGGAGGATGATTGTTGACCTTGAGGCCCCTAGATTTGACAGTGGTTCTATAGTTAGCCAGGATCCAGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCGATTCTCAAGATACTTGTAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACGGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATCAGAGGCACATCCATTTTACTAACAGCATATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCTCAGGGCATTGATTTTGTACGTGTTGGAAGACATGGTGTAGTGAATGAAGAGGTCAGAGGGTATTGTCTTTCAGAAACAAACGTACAGACCGTTGAAGATATCAAAAATAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGCATTTCCAGTCCCCTGCTTGCCGACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACTACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCAACGTTTGTTCTCGTGGGGGATCATTATCAACTGCCACCACTTGTCCATAGTACAGAGGCCCGAGAAAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCAGAAGCCCATCCACAGGCGATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAAATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAACTGCTGTTTGCCTTGGCTAGAAGATGTTTTGAATCCTGGAAGACCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAATTGTAAATAACCCTATGGAAGCTCACATAATTGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGAAGGAGAGCGCATTGGCATTATTACTCCCTATAATTCACAAGCAAACCTCATCCGGCAAGCTGCATGCATAACGTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTATTATCTTTTGTACGGTCTTGTGAGAACCCAACAAGCTGTGTGGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGTAAAACTCTATTGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTAAGTGTCTCTAAGAAGGATATCTATAGAAATGGTGAACTCATTAGATGTTCTCAAATTGCTTCTTCAAAACAAAAATTAGATGTTCCCAAATGGTGA 4077 0.4069 MPPKKKLNTSSSSKKPNPQPSKYGIQHFFDRHATQQQSQKLQSNNSTSQAVASDSLPPPGKPKDADAPSGASLQGSTPNDSVLPAVTDVTDNLSEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKHTPKIIQALADSSRANMLLIQRCSEDKTSLDKGAKVEQLLITPTPSASAKAPLSLSKLGLKKLNPDRDVDFNCNPTTLSNSSVSADRNPFRTPPSLSCRVDKLAKDAEHNGPSDQPFLRQHKKVLLELLDQVEDAIGVDNDTVCDKNAHSFKSQDDFANKLPVKVNHLAERTTSHIPKEVVGVFSNSSYLVLEVSEKLQPAAEGPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGNCDINHDNNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKSNEHSSVALCGTLLHQIFQAGLTNDNPTIDFLECYTEVVLQRNVESLFACGVNEKDVRKTMIDAIPRIYSWIMLFRNMKEREDPNVNFGCVNGMKNVGISEASSNLLSCVIDIEEMAWAPKYGLKGMIDASVRVKVQSRKDKLEEKIMPLEFKTGKSPSSQTSVEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTHGITIQRSDIVGLIIRRNELASDILKALVLQQLPPVLQSPSMCRGCRHLNVCSIYHKAHGGSIESNELGDVFSSNTNHLTSSHSKFLCHWDHLIDLEAKGTEFLKKDMWRSYNSGTRSAGGVSSIVIDASQGMPYSKSHENNSFVYRFVPHDTSCPSIVSDDDPSSASVKNDLDLTLRSGDYVILSNESSHQTIAKGVISDISQNHISVSFSKLLRIPGRSSTEHDLLQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRVGRHGVVNEEVRGYCLSETNVQTVEDIKNRLEQVKVVAVTCLGISSPLLADKRFDVCIMDEAGQTTLPVSLGPLRFASTFVLVGDHYQLPPLVHSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSGLNCCLPWLEDVLNPGRPVIFIDTDMLPALEERDQKIVNNPMEAHIIAEVAKELVKNGIEGERIGIITPYNSQANLIRQAACITSLEIHTIDKYQGRDKDCILLSFVRSCENPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLLKVPLLKLLIKKVEEQSGILSVSKKDIYRNGELIRCSQIASSKQKLDVPKW 1358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00838 1358 Gene3D - 1126 1334 IPR027417 -
Trre13g00838 1358 Gene3D - 855 1125 IPR027417 -
Trre13g00838 1358 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g00838 1358 MobiDBLite consensus disorder prediction 1 84 - -
Trre13g00838 1358 MobiDBLite consensus disorder prediction 30 54 - -
Trre13g00838 1358 Pfam DNA replication factor Dna2 358 568 IPR014808 -
Trre13g00838 1358 Gene3D - 533 685 IPR011604 -
Trre13g00838 1358 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1024 1125 - -
Trre13g00838 1358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 927 1313 IPR027417 -
Trre13g00838 1358 MobiDBLite consensus disorder prediction 70 84 - -
Trre13g00838 1358 FunFam DNA replication helicase Dna2 507 685 - -
Trre13g00838 1358 PANTHER DNA2/NAM7 HELICASE FAMILY 196 1323 IPR045055 -
Trre13g00838 1358 CDD SF1_C_Upf1 1128 1304 IPR047187 -
Trre13g00838 1358 Pfam AAA domain 1104 1304 IPR041679 -
Trre13g00838 1358 CDD DNA2_N-like 413 656 - -
Trre13g00838 1358 FunFam DNA replication helicase 1126 1338 - -
Trre13g00838 1358 CDD DEXXQc_DNA2 927 1127 IPR026851 GO:0017116
Trre13g00838 1358 Pfam AAA domain 928 1018 IPR041677 GO:0004386
Trre13g00838 1358 Pfam AAA domain 1027 1095 IPR041677 GO:0004386
Trre13g00838 1358 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 870 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00838 Trre-Chr13 6681075 6698784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00838 1 1069 Core DNA Replication Machinery Family AT1G08840 53.761 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00838 K10742 - gmx:100799415 1772.29