Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00837 ATGCCTCCAAAGAAGAAACTCAACACTTCATCATCTTCCAAAAAACCCAATCCACAACCTTCCAAATACGGTATTCAACACTTCTTCGATCGTCACGCAACTCAACAACAATCTCAGAAACTTCAATCTAACAATTCAACCTCTCAGGCTGTTGCTTCCGATTCTCTTCCACCGCCGGGAAAACCTAAAGACGCCGATGCTCCGTCAGGTGCATCTTTGCAGGGCAGTACACCTAATGATTCAGTGTTACCGGCGGTCACTGATGTTACAGATAACCTCTCTGAGGTGTCTCCGGAGATTTCTAAGTCTATGTCGCGCAAACGTTTCAAATTCTCACCTGGAATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGTTTCAAAACACACGCCTAAGATAATTCAAGCATTGGCTGATTCTTCGAGGGCCAACATGTTGCTAATTCAACGCTGCTCAGAAGATAAGACTTCTCTGGACAAAGGTGCCAAGGTTGAACAGTTGCTTATTACACCAACTCCTAGTGCATCTGCAAAAGCTCCGTTGTCATTGAGTAAATTGGGCTTGAAAAAATTAAACCCTGACCGAGATGTGGATTTTAATTGCAATCCAACTACTTTGAGCAACTCTTCAGTGTCTGCTGACAGAAATCCCTTCAGAACTCCACCATCTTTGTCTTGTCGCGTAGATAAGCTTGCCAAGGATGCTGAGCACAACGGACCATCTGACCAGCCTTTTTTGAGGCAGCACAAAAAGGTGTTGCTTGAACTTTTAGATCAAGTCGAAGATGCAATTGGTGTTGATAATGATACAGTTTGTGATAAAAACGCACACTCCTTTAAATCGCAAGATGACTTTGCTAACAAGCTCCCCGTCAAAGTTAACCATCTAGCTGAAAGGACAACATCACATATACCTAAAGAAGTTGTTGGTGTTTTCTCCAATTCTAGTTACTTGGTTTTGGAGGTATCTGAAAAATTGCAACCTGCTGCTGAAGGCCCATACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGGGCTGTAAATTTGTGGGATGAATGGTCTTACAGTGTAATTGCCCCTGGAGATACTGTGAATGTAATTGGTCAATTTGATGAAGGGGGAAATTGTGATATTAATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTTGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACCGTCTTAGATGAGAGACTAAAATCCAATGAGCACTCAAGTGTAGCTTTATGTGGAACCTTGCTTCATCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAGACTTCTTAGAATGTTACACAGAAGTGGTTTTACAGAGAAATGTTGAAAGTTTATTTGCATGTGGAGTAAATGAAAAGGATGTTCGCAAAACCATGATTGATGCTATCCCTAGAATATACAGTTGGATTATGCTGTTCAGAAATATGAAGGAAAGAGAAGACCCTAACGTTAATTTTGGATGTGTTAATGGAATGAAGAACGTTGGCATTTCTGAGGTAATTGATATTGAAGAAATGGCATGGGCACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAGGTTCAATCTAGAAAAGATAAACTAGAGGAGAAGATCATGCCACTAGAGTTCAAAACTGGAAAATCACCTAGTAGCCAGACATCAGTAGAACATAATGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTCTGTATTATCTCCAAACAGATCAGACACATGGCATCACGATTCAAAGATCTGACATAGTTGGGTTGATAATACGTCGTAATGAGCTAGCAAGTGATATTTTGAAGGCGTTAGTACTGCAACAACTTCCACCGGTGTTACAGAGTCCTAGCATGTGCAGAGGCTGCCGCCATCTTAATGTCTGTAGCATTTATCATAAGGCACATGGTGGAAGCATCGAGAGCAATGAATTGGGAGATGTTTTCAGTTCCAATACTAATCACTTGACATCATCTCATTCTAAGTTCCTCTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTTTAAAGAAAGACATGTGGCGATCATATAATTCGGGGACTCGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATGCCATATTCAAAATCTCATGAAAATAATAGTTTCGTTTATCGTTTTGTACCACATGATACTTCTTGCCCCTCTATAGTTTCTGATGATGATCCTTCTAGTGCCTCTGTGAAAAATGATTTAGATCTCACACTGAGAAGTGGTGACTATGTGATATTGAGTAATGAATCAAGCCATCAAACTATTGCAAAAGGGGTGATTTCAGATATTAGTCAGAATCATATATCTGTTTCCTTTTCCAAGCTCTTGAGAATTCCTGGGAGGTCTTCCACGGAACATGATCTCCTTCAGCAAGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCGTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTCCGGAGGATGATTGTTGACCTTGAGGCCCCTAGATTTGACAGTGGTTCTATAGTTAGCCAGGATCCAGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCGATTCTCAAGATACTTGTAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACGGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATCAGAGGCACATCCATTTTACTAACAGCATATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCTCAGGGCATTGATTTTGTACGTGTTGGAAGACATGGTGTAGTGAATGAAGAGGTCAGAGGGTATTGTCTTTCAGAAACAAACGTACAGACCGTTGAAGATATCAAAAATAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGCATTTCCAGTCCCCTGCTTGCCGACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACTACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCAACGTTTGTTCTCGTGGGGGATCATTATCAACTGCCACCACTTGTCCATAGTACAGAGGCCCGAGAAAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCAGAAGCCCATCCACAGGCGATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAAATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAACTGCTGTTTGCCTTGGCTAGAAGATGTTTTGAATCCTGGAAGACCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAATTGTAAATAACCCTATGGAAGCTCACATAATTGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGAAGGAGAGCGCATTGGCATTATTACTCCCTATAATTCACAAGCAAACCTCATCCGGCAAGCTGCATGCATAACGTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTATTATCTTTTGTACGGTCTTGTGAGAACCCAACAAGCTGTGTGGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGTAAAACTCTATTGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTAAGTGTCTCTAAGAAGGATATCTATAGAAATGGTGAACTCATTAGATGTTCTCAAATTGCTTCTTCAAAACAAAAATTAGATGTTCCCAAATGGTGA 4053 0.4071 MPPKKKLNTSSSSKKPNPQPSKYGIQHFFDRHATQQQSQKLQSNNSTSQAVASDSLPPPGKPKDADAPSGASLQGSTPNDSVLPAVTDVTDNLSEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKHTPKIIQALADSSRANMLLIQRCSEDKTSLDKGAKVEQLLITPTPSASAKAPLSLSKLGLKKLNPDRDVDFNCNPTTLSNSSVSADRNPFRTPPSLSCRVDKLAKDAEHNGPSDQPFLRQHKKVLLELLDQVEDAIGVDNDTVCDKNAHSFKSQDDFANKLPVKVNHLAERTTSHIPKEVVGVFSNSSYLVLEVSEKLQPAAEGPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGNCDINHDNNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKSNEHSSVALCGTLLHQIFQAGLTNDNPTIDFLECYTEVVLQRNVESLFACGVNEKDVRKTMIDAIPRIYSWIMLFRNMKEREDPNVNFGCVNGMKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKVQSRKDKLEEKIMPLEFKTGKSPSSQTSVEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTHGITIQRSDIVGLIIRRNELASDILKALVLQQLPPVLQSPSMCRGCRHLNVCSIYHKAHGGSIESNELGDVFSSNTNHLTSSHSKFLCHWDHLIDLEAKGTEFLKKDMWRSYNSGTRSAGGVSSIVIDASQGMPYSKSHENNSFVYRFVPHDTSCPSIVSDDDPSSASVKNDLDLTLRSGDYVILSNESSHQTIAKGVISDISQNHISVSFSKLLRIPGRSSTEHDLLQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRVGRHGVVNEEVRGYCLSETNVQTVEDIKNRLEQVKVVAVTCLGISSPLLADKRFDVCIMDEAGQTTLPVSLGPLRFASTFVLVGDHYQLPPLVHSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSGLNCCLPWLEDVLNPGRPVIFIDTDMLPALEERDQKIVNNPMEAHIIAEVAKELVKNGIEGERIGIITPYNSQANLIRQAACITSLEIHTIDKYQGRDKDCILLSFVRSCENPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLLKVPLLKLLIKKVEEQSGILSVSKKDIYRNGELIRCSQIASSKQKLDVPKW 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00837 1350 Pfam AAA domain 1019 1087 IPR041677 GO:0004386
Trre13g00837 1350 Pfam AAA domain 920 1010 IPR041677 GO:0004386
Trre13g00837 1350 Pfam DNA replication factor Dna2 358 560 IPR014808 -
Trre13g00837 1350 MobiDBLite consensus disorder prediction 30 54 - -
Trre13g00837 1350 MobiDBLite consensus disorder prediction 1 84 - -
Trre13g00837 1350 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g00837 1350 Gene3D - 413 677 IPR011604 -
Trre13g00837 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 919 1305 IPR027417 -
Trre13g00837 1350 FunFam DNA replication helicase 1118 1330 - -
Trre13g00837 1350 MobiDBLite consensus disorder prediction 70 84 - -
Trre13g00837 1350 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1016 1117 - -
Trre13g00837 1350 CDD SF1_C_Upf1 1120 1296 IPR047187 -
Trre13g00837 1350 Gene3D - 847 1117 IPR027417 -
Trre13g00837 1350 FunFam DNA replication helicase Dna2 520 677 - -
Trre13g00837 1350 CDD DEXXQc_DNA2 919 1119 IPR026851 GO:0017116
Trre13g00837 1350 Gene3D - 1118 1326 IPR027417 -
Trre13g00837 1350 PANTHER DNA2/NAM7 HELICASE FAMILY 195 1315 IPR045055 -
Trre13g00837 1350 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 862 1011 - -
Trre13g00837 1350 CDD DNA2_N-like 413 648 - -
Trre13g00837 1350 Pfam AAA domain 1096 1296 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00837 Trre-Chr13 6681075 6698784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00837 1 1061 Core DNA Replication Machinery Family AT1G08840 54.159 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00837 K10742 - gmx:100799415 1779.61