Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00833 ATGGTTCCTTCCTCCATCAACCCATTCTCTATGATGCCAACTCCTTCATTTAATGCTGTAGACGACAATGGATTACAAAGTGAAATTTTCAATGGCGAAAATCCAATGACCTTTGCACCAAACAATAACAAAATGGAAGGAATGCATTGTCGCCTTAACACTAGCAAAGGAATTTGGGATTTGGCAAAAAACAATCTCTTTCAATACGATGAAACTTCACAATCTCGGGCAAGTCCCTTTCCAGTTAAGCCCGAGCTTCAAGGCAATATCTCTGGCATTGGTGGAATTGGGAACAACTCCCGAGATAGTGATCCAGAATTTGTTCTTAGTGAACAAAAGCGACAAAAGAGGATTCAGAAAAACAGTGAAATTCAACTCAGAAATTCCAATTTAATCAAAGGCCAATGGACTGCTAACGAGGATAGGATTCTTGTCCAATTGGTGAATCACTATGGGCTTAGAAGATGGTCCAAAATTGCTAAACATCTGAAAGGCAGGATTGGAAAACAGTGCAGGGAGAGATGGAATAACCATCTTAGACCGGACATTAAGAAAGAGTCATGGAGCGAAGAGGAGGACAAAGTACTGATTGAAGCTCATAAGATAGTTGGGAACAAATGGGCTGAAATTGCGAAGAGCTTGCCTGGGCGTACCGAGAATTCTATCAAGAACCACTGGAACGCCACTAAGCGCAGCCAGAATGCCAAGAAGAGGCCGAATAGGCGGAATAGTTTGAAGGGAACACTACTTCAAAAATACATCAGTGAAGTAACTGCCACTAAGGAAGCTGAAAAGGAGCTGATGATGGAGAATCCCACAAACATGATGAATATTGAGAATCAGCAAAATTTCGAAAGTTCGGAGAGTGATTACACTTCTGAAGGTTTAGCTACTCCTGAGGATGAAATTGAAGGCTATGTTCCTATGATGTTCAATGATACTATTGATGATGGAATGGCAAGTGGCTCTGGCACTACAATGAATTATGAGTTTGGATCATATGGAATGGCAGGTGGTTCTGGCACTACAATGAATTATGACTTTTGTCCTGAGGTTGCTATGAAGCAGGAACTTGATCTCATGGAGATGATCTATGGAAACAACCCTTAA 1110 0.4126 MVPSSINPFSMMPTPSFNAVDDNGLQSEIFNGENPMTFAPNNNKMEGMHCRLNTSKGIWDLAKNNLFQYDETSQSRASPFPVKPELQGNISGIGGIGNNSRDSDPEFVLSEQKRQKRIQKNSEIQLRNSNLIKGQWTANEDRILVQLVNHYGLRRWSKIAKHLKGRIGKQCRERWNNHLRPDIKKESWSEEEDKVLIEAHKIVGNKWAEIAKSLPGRTENSIKNHWNATKRSQNAKKRPNRRNSLKGTLLQKYISEVTATKEAEKELMMENPTNMMNIENQQNFESSESDYTSEGLATPEDEIEGYVPMMFNDTIDDGMASGSGTTMNYEFGSYGMAGGSGTTMNYDFCPEVAMKQELDLMEMIYGNNP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00833 369 Pfam Myb-like DNA-binding domain 136 194 - -
Trre13g00833 369 SMART sant 132 181 IPR001005 -
Trre13g00833 369 SMART sant 184 232 IPR001005 -
Trre13g00833 369 FunFam Transcriptional activator Myb isoform A 132 185 - -
Trre13g00833 369 MobiDBLite consensus disorder prediction 219 246 - -
Trre13g00833 369 CDD SANT 187 230 IPR001005 -
Trre13g00833 369 ProSiteProfiles Myb-like domain profile. 128 179 IPR001005 -
Trre13g00833 369 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
Trre13g00833 369 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Trre13g00833 369 Gene3D - 132 184 - -
Trre13g00833 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Trre13g00833 369 PANTHER MYB PROTEIN-RELATED 114 258 - -
Trre13g00833 369 CDD SANT 136 179 IPR001005 -
Trre13g00833 369 Gene3D - 187 229 - -
Trre13g00833 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00833 Trre-Chr13 6653831 6657037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00833 125 257 MYB Transcription Factor Family AT4G18770 69.925 3.06e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00833 Myb_DNA-bind_6 4.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00833 K09422 - psat:127129356 420.624