Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00832 ATGGTTCCATTGCAACCAAGTTTAACTGTTTCTCCTTTACCATCACATTGCACCACCTTTTTATACAAAAATAATTTCAACCAATTTAAGGAACATCGTCTGAATGGAGCTAACCATCACTCTAGTTTTGATACGATGGTTCCTTCCTCCATCAACCCATTCTCTATGATGCCAACTCCTTCATTTAATGCTGTAGACGACAATGGATTACAAAGTGAAATTTTCAATGGCGAAAATCCAATGACCTTTGCACCAAACAATAACAAAATGGAAGGAATGCATTGTCGCCTTAACACTAGCAAAGGAATTTGGGATTTGGCAAAAAACAATCTCTTTCAATACGATGAAACTTCACAATCTCGGGCAAGTCCCTTTCCAGTTAAGCCCGAGCTTCAAGGCAATATCTCTGGCATTGGTGGAATTGGGAACAACTCCCGAGATAGTGATCCAGAATTTGTTCTTAGTGAACAAAAGCGACAAAAGAGGATTCAGAAAAACAGTGAAATTCAACTCAGAAATTCCAATTTAATCAAAGGCCAATGGACTGCTAACGAGGATAGGATTCTTGTCCAATTGGTGAATCACTATGGGCTTAGAAGATGGTCCAAAATTGCTAAACATCTGAAAGGCAGGATTGGAAAACAGTGCAGGGAGAGATGGAATAACCATCTTAGACCGGACATTAAGAAAGAGTCATGGAGCGAAGAGGAGGACAAAGTACTGATTGAAGCTCATAAGATAGTTGGGAACAAATGGGCTGAAATTGCGAAGAGCTTGCCTGGGCGTACCGAGAATTCTATCAAGAACCACTGGAACGCCACTAAGCGCAGCCAGAATGCCAAGAAGAGGCCGAATAGGCGGAATAGTTTGAAGGGAACACTACTTCAAAAATACATCAGTGAAGTAACTGCCACTAAGGAAGCTGAAAAGGAGCTGATGATGGAGAATCCCACAAACATGATGAATATTGAGAATCAGCAAAATTTCGAAAGTTCGGAGAGTGATTACACTTCTGAAGGTTTAGCTACTCCTGAGGATGAAATTGAAGGCTATGTTCCTATGATGTTCAATGATACTATTGATGATGGAATGGCAAGTGGCTCTGGCACTACAATGAATTATGAGTTTGGATCATATGGAATGGCAGGTGGTTCTGGCACTACAATGAATTATGACTTTTGTCCTGAGGTTGCTATGAAGCAGGAACTTGATCTCATGGAGATGATCTATGGAAACAACCCTTAA 1245 0.4064 MVPLQPSLTVSPLPSHCTTFLYKNNFNQFKEHRLNGANHHSSFDTMVPSSINPFSMMPTPSFNAVDDNGLQSEIFNGENPMTFAPNNNKMEGMHCRLNTSKGIWDLAKNNLFQYDETSQSRASPFPVKPELQGNISGIGGIGNNSRDSDPEFVLSEQKRQKRIQKNSEIQLRNSNLIKGQWTANEDRILVQLVNHYGLRRWSKIAKHLKGRIGKQCRERWNNHLRPDIKKESWSEEEDKVLIEAHKIVGNKWAEIAKSLPGRTENSIKNHWNATKRSQNAKKRPNRRNSLKGTLLQKYISEVTATKEAEKELMMENPTNMMNIENQQNFESSESDYTSEGLATPEDEIEGYVPMMFNDTIDDGMASGSGTTMNYEFGSYGMAGGSGTTMNYDFCPEVAMKQELDLMEMIYGNNP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00832 414 Gene3D - 232 274 - -
Trre13g00832 414 PANTHER MYB PROTEIN-RELATED 162 302 - -
Trre13g00832 414 Gene3D - 177 229 - -
Trre13g00832 414 Pfam Myb-like DNA-binding domain 181 239 - -
Trre13g00832 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 279 IPR017930 -
Trre13g00832 414 SMART sant 177 226 IPR001005 -
Trre13g00832 414 SMART sant 229 277 IPR001005 -
Trre13g00832 414 SUPERFAMILY Homeodomain-like 175 271 IPR009057 -
Trre13g00832 414 ProSiteProfiles Myb-like domain profile. 225 275 IPR001005 -
Trre13g00832 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 228 IPR017930 -
Trre13g00832 414 CDD SANT 232 275 IPR001005 -
Trre13g00832 414 CDD SANT 181 224 IPR001005 -
Trre13g00832 414 FunFam Transcriptional activator Myb isoform A 177 230 - -
Trre13g00832 414 MobiDBLite consensus disorder prediction 264 291 - -
Trre13g00832 414 ProSiteProfiles Myb-like domain profile. 173 224 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00832 Trre-Chr13 6653831 6657172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00832 170 302 MYB Transcription Factor Family AT4G18770 69.925 1.06e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00832 Myb_DNA-bind_6 5.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00832 K09422 - psat:127129356 466.077