Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00830 ATGTATAGATTAATATCCACGCCGGCATCAAAATTCCGCCAATTCCGGCGACTCCGCTCCAGACCTAAAATCACCGCCGCAAGTGTCGAAGAGAAACACGCTTCACATATCTTACTATGGCGGTACCAGATCCTGGATCCAGACAGCGAATTCGTTGCGTATTGGAACAAAGTTTTTCTCGTCACAAGTCTCCTCGCATTGTTCATAGACCCTCTTTACTTCTTCCTTCCAACTGTTGGTGGACCTGCTTGTTTAACGGCAGATCCCAAAATCAGTATCTTAATCACCGTTCTTCGATCGTTTGCGGATCTTTTTTATGTTCTTCATATGGTTATGAAGTTTCGTACTGCATTTGTTGCTCCTAATTCCAGAATTGTCGGTCGCGGTGAGCTTGTTATGGATGCTTGGCAAATTGCTTTGCGGTATTTGAAGTCTGATTTTGTTATTGATCTTGCTGCTACCATTCCTTTGCCTCAGATCGTTATTTGGTTAGTGATTCCAGCGAGTAGAGGCACAAAAAGTGATCATGGCAACAACACTCTTGCACTCTTTGTTCTTATTCAGTACGTTCCTAGGCTCTTTCTCATCTTTCCTTTGAACCAGCGTATTCAAAAAACAACTGGTGTTATAGCCAAGACACCCTGGATCGGTGCTGCGTACAATCTTGTTCTCTACATGCTAGCTAGCCATGTTACAGGAGCAACTTGGTATCTCTCATCAATAGGAAGACAATTCAATTGCTGGAAAACACAATGCGATCAGGAAAATCGATCGCATACCCTTTCTTGCTTGCCAAGTTTTCTTGATTGTAATAGTTTGGAACTCCCTGAGAGACAATACTGGCTAAATATCACACGTGTTGTTACCAAGTGTGATGCAAAGAGTAAGATCAACATCAAATACAAGTTTGGGATGTTTGCAGATGCTTTCCTCAATGATGTTGTCACTACTAGTTTTAAGGAAAGATACTTCTATTGCCTTTGGTGGGGTTTAAGAAATTTAAGTTCTTATGGGCAAAATTTGGACACCACCACATACCTTTTAGAGACAATTTTTTGCATCGTCTTATGCATTGCTGGATTAGTTCTCTTTTCGCTTTTGATTGGAAACATGCAGACATACTTGCAATCGATGACAGTTAGACTAGACGAATGGAGGATTCGGAAAAGAGATACAGAGGAATGGATGAGGCATCGACAGTTACCTCCAGAATTGCAGGAACGTGTCCGTCGCTTCGTTCAATATAAATGGCTAGCTACAAGAGGAGTGGATGAAGAGTCCATACTGCTATCCTTACCTTTAGATCTACGCCGTGAAATTCAACATCACTTGTGTCTCTCTCTAGTGCGACGTGTGCCATTTTTCTCACAAATGGATGATCAACTACTTGATGCAATATGTGAACGCCTTGTATCGTCATTAAGTACACAAGGCACATATATATTTCAAGAAGATGATCCAGTAGATGAAATGTTGTTTATCATTAGAGGTACATTAGAGAGTTCTACAACCAATGGAGGAAGGTATGGATTCTTCAATTCAATCACACTAAGGCCAGGAGACTTTTGTGGAGAAGAATTGTTAACATGGGCTTTATTACCAAACTCAACCCTCAATTTACCTTCGTCTACTCGTACCGTAAAAGCTCTTACCGAAGTAGAAGCTTTTGCACTACAAGCAGAGGATCTAAAATTTGTGGCGAGTCAGTTCAAGCGGCTTCACAGCAAGAAACTTCAGCATGCTTTTAGATATTATTCACAGCAATGGAGAACATGGAGTTCTTGTTTCATACAAGCAGCATGGAGAAAGTATAAGAAAAGAAAGGCAGCAAGGGAATTGTCAATTAAAGAGGGAATTTACTACATGGAGGATCCTGAGATTGAGGAATCATCAGGGAATGGTACAAAAGTTAAGAATCTTGGTGCTACTGTTTTGGCTTCAAGATTTGCTGCAAATACAAAGAAAGGGAATAATAAGATTCAAGACAGTGATCCTGTGCCGCAGTTGTTTAAACCTGTTGAACCTGATTTCTCTCATCATGATGTTTAG 2049 0.4075 MYRLISTPASKFRQFRRLRSRPKITAASVEEKHASHILLWRYQILDPDSEFVAYWNKVFLVTSLLALFIDPLYFFLPTVGGPACLTADPKISILITVLRSFADLFYVLHMVMKFRTAFVAPNSRIVGRGELVMDAWQIALRYLKSDFVIDLAATIPLPQIVIWLVIPASRGTKSDHGNNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNCWKTQCDQENRSHTLSCLPSFLDCNSLELPERQYWLNITRVVTKCDAKSKINIKYKFGMFADAFLNDVVTTSFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETIFCIVLCIAGLVLFSLLIGNMQTYLQSMTVRLDEWRIRKRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEESILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFQEDDPVDEMLFIIRGTLESSTTNGGRYGFFNSITLRPGDFCGEELLTWALLPNSTLNLPSSTRTVKALTEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWSSCFIQAAWRKYKKRKAARELSIKEGIYYMEDPEIEESSGNGTKVKNLGATVLASRFAANTKKGNNKIQDSDPVPQLFKPVEPDFSHHDV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00830 682 Gene3D - 59 379 - -
Trre13g00830 682 Gene3D Helix hairpin bin 382 445 - -
Trre13g00830 682 SUPERFAMILY Voltage-gated potassium channels 46 376 - -
Trre13g00830 682 Pfam Ion transport protein 54 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre13g00830 682 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 677 - -
Trre13g00830 682 FunFam Cyclic nucleotide-gated ion channel 1 381 445 - -
Trre13g00830 682 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Trre13g00830 682 CDD CAP_ED 454 585 IPR000595 -
Trre13g00830 682 SUPERFAMILY cAMP-binding domain-like 385 579 IPR018490 -
Trre13g00830 682 MobiDBLite consensus disorder prediction 655 682 - -
Trre13g00830 682 SMART cnmp_10 454 585 IPR000595 -
Trre13g00830 682 FunFam Cyclic nucleotide-gated ion channel 1 452 570 - -
Trre13g00830 682 Gene3D Jelly Rolls 452 572 IPR014710 -
Trre13g00830 682 Pfam Cyclic nucleotide-binding domain 477 565 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00830 Trre-Chr13 6642968 6647488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00830 25 678 Ion Channels AT5G14870 68.035 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00830 K05391 - gmx:100802812 1195.26