Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00827 ATGGACAAAAAAGAGTGCAATTCTTCTCATCAAGATCCTGATGTACGAAAAGGACCATGGACTATGGAAGAAGATATGATCTTGGTCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCCTTAGCAAAATCTGCTGGTCTTAAACGTACCGGAAAAAGTTGTAGACTTCGCTGGTTAAACTATCTTCGACCAGATGTTAGACGAGGGAATATTACAACTGAGGAACAACTCTTAATCATTGAACTTCATGCAAAGTGGGGAAACAGGTGGTCTAAAATCGCGAAACATCTACCGGGAAGAACCGATAATGAGATAAAGAACTATTGGAGGACTAGGATTCAGAAACATATCAAGCAAACTGAGAATTCATCACAACAGAGTTCTTCTGATATTCAAATAAATGATAATGATAATCAAATAGGAAGCACTAGTCAAATTTCAGCCATGCCTGAACCAATGGACACAAATATTATCTCACCACCTTCTTATCAAGGAATTTTGGAACCATTTCCAAATCAGTTTCCTACAATCTCTGATCAATCAAGTTGTTGTACCAATAATGACAATAACTATTGGAGCATGGAAGATCTCTTGTCATTGCAATTACTAAATGGAGATTAA 627 0.3684 MDKKECNSSHQDPDVRKGPWTMEEDMILVNYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQTENSSQQSSSDIQINDNDNQIGSTSQISAMPEPMDTNIISPPSYQGILEPFPNQFPTISDQSSCCTNNDNNYWSMEDLLSLQLLNGD 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00827 208 MobiDBLite consensus disorder prediction 120 155 - -
Trre13g00827 208 FunFam Myb-related protein 305 74 148 - -
Trre13g00827 208 CDD SANT 74 113 IPR001005 -
Trre13g00827 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Trre13g00827 208 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Trre13g00827 208 Gene3D - 73 142 - -
Trre13g00827 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Trre13g00827 208 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Trre13g00827 208 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Trre13g00827 208 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Trre13g00827 208 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Trre13g00827 208 SMART sant 69 117 IPR001005 -
Trre13g00827 208 SMART sant 16 66 IPR001005 -
Trre13g00827 208 CDD SANT 19 64 IPR001005 -
Trre13g00827 208 Gene3D - 17 69 - -
Trre13g00827 208 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 142 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre13g00827 208 FunFam Myb transcription factor 17 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00827 Trre-Chr13 6598184 6604382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00827 11 208 MYB Transcription Factor Family AT3G01530 57.576 1.52e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00827 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00827 K09422 - gmx:778046 327.02