Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00815 ATGGTGGAAAGTGAAGAACAAACATCGATGATTGGATCGAATAGCCAAAATGTGATATCACTTATAAGTCCAAGATTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCACTTTTACTTGCATCTCTCATTGTTGAAGATACACCTGATAGAGATTCAAAACATAAGAGGCGTTTTGTTTTGAATTCTAAATCTCCACTATCTAATTCATCAAGGAAACGCAGAGCTCAGAGGAATCCTCCACAACCAATTGTTCTTGATCTAGATGATGAAGAAACTCCAAAAAAGGATAGTGAGAAAAAGAAGAAAGAAAAGAAAATTTGTGTTACTGAAGAAAGTAAAGTTAAAGAAAAGGAATTGACTCAAAAGGGTATTGATGTCAATTCAACTAGTTCTTCTACTCTTCCTTGTATGGATAAGCTGAGAGAAGAGCTTTCATGTGCTATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGAGATCTGCTGCAGATAAGTGTGGCAAAAAGTGTCCTAAATGTAGGCAATTGATAAGCAATGGACGATCGTGCACTGTGAACACGGTTCTTTGGAACACAATTCAACTCCTATTTCCTCAAGAAATTGAAGCAAGGAAAGCAGCTGCTGTCGTTGCGAATAATAGACAAGCACCAGCTGAGAATCCAATTCCAGAAACAAGATTTTACAATAATCAAAGGAATAGAAGTATACAACCGTATCCATCGAGTAGGGCTATGAGTTCGAGGAGATATGAAACAACGACAGAGGATGATGAGGATGCTGCATTGGCTAGACTGTTACAAAGAGAAATTGATGGACTAAGCAATCAAAGGGCAACAGTGACAACAAGGGTTTCAAGTGTAAGAGGAAGGACAAGAAGAGGGGTTGTGGCTCAAGATGAAGATGCTGCTTTTGCTCTAAGGTTGCAAAGAGAGGAGTTTATGCATGCTTTTAGGGGGGGTAGCAACAACCAGGAGCAGTCATCTTCTTCATCTACATTAGCTAGATCAAATTTGAGGGCAATGGCAACTAGAGCGATGAATATTCGTATTAGGGATCAAAGGATGTAA 1110 0.3937 MVESEEQTSMIGSNSQNVISLISPRFKSAAAMAGWDEEALLLASLIVEDTPDRDSKHKRRFVLNSKSPLSNSSRKRRAQRNPPQPIVLDLDDEETPKKDSEKKKKEKKICVTEESKVKEKELTQKGIDVNSTSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAAVVANNRQAPAENPIPETRFYNNQRNRSIQPYPSSRAMSSRRYETTTEDDEDAALARLLQREIDGLSNQRATVTTRVSSVRGRTRRGVVAQDEDAAFALRLQREEFMHAFRGGSNNQEQSSSSSTLARSNLRAMATRAMNIRIRDQRM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00815 369 Pfam Zinc finger, C3HC4 type (RING finger) 149 187 IPR018957 GO:0046872
Trre13g00815 369 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Trre13g00815 369 MobiDBLite consensus disorder prediction 53 106 - -
Trre13g00815 369 PANTHER UNCHARACTERIZED 312 361 - -
Trre13g00815 369 MobiDBLite consensus disorder prediction 90 106 - -
Trre13g00815 369 MobiDBLite consensus disorder prediction 332 351 - -
Trre13g00815 369 MobiDBLite consensus disorder prediction 64 79 - -
Trre13g00815 369 MobiDBLite consensus disorder prediction 248 271 - -
Trre13g00815 369 MobiDBLite consensus disorder prediction 248 262 - -
Trre13g00815 369 SUPERFAMILY RING/U-box 141 212 - -
Trre13g00815 369 SMART ring_2 149 187 IPR001841 -
Trre13g00815 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 218 IPR013083 -
Trre13g00815 369 ProSiteProfiles Zinc finger RING-type profile. 149 188 IPR001841 -
Trre13g00815 369 MobiDBLite consensus disorder prediction 333 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00815 Trre-Chr13 6313172 6315332 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00815 100 280 C3H Transcription Factor Family AT3G58030 25.000 1.81e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00815 - - gmx:102666585 389.808