LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g00808	ATGATGAATCCTAAGAATTCAGTTTCACAGATTAAGAGACTTATTGGGAAGAAGTTTTCTGATGAGTCTTTGCCTTTTAGTGTCAGTGAAGGACCTGATGGGTGTCCTTTGATTCATGCTAGGTATTTAGGGGAAGTTAAGACGTTTACTCCTACGCAAGTGTTTGCGATGATGTTGTCGAATATGAAAGAGATTGCTACGAAAAATCTTAATGATGCGGTTCATGACTGTTGCATTGCGATTCCGGTTTATTTTACTGATCTTCAGAGAAGGGCTGTTTTGCACCCACTTCGGTTGCTTCATGAAACTACTGCGACTGCATTGGCGTATGGGATTTATAAGACGGATTTGTCCGAAACTGATCCTCTGAATGTGGCTTTTGTGGATATTGGACATGCCACTATGCAGGTGTGCATTGCTGGATTCAAAAAGGGGCAGCTGAAAGTGGTGGCTCATTTGTTCGATAGGTCTCTTGGTGGTAGGGATTTTGATGAGGTTTTGTTCCATCATTTTGCTGGGAAGTTTAAGGAGGAGTACAAAATTGATGTGCTTCAGAATGCTAGGGCATGTTTGAGGCTTAGGGCTGCTTGTGAGAAGATGAAGAAGATGCTCAGTGCAAATTTTGTGGTGCTCTTGAACATTGAGTGCTTGATGGATGAGAAGGATGTGAAGGGTATCATGAAGCGTGATGAGTTTGAGGAACCGAGTCTCCCGATTTTGGAGCGTGTCAAGGGTCCTTTGGAAAAGGCACTTGCTGACGCAGGACTCTCAGTCGATGATATACATATAGTTGAGGTAGTTGGTTCAGGATCTCGTGTACCGGCTATAAACAAAATATTGACTGAGTTTTTCAAGAAGGAGCCTAGGCGGACAATGAACGCGAGTGAATGTGTTGCTAAAGGAGCTGCATTGCAATGTGCTATTCTTAGCCCAACGTTTAAAGTCCGAGAATTTCAGGTCAACGAAAGCTTTCCCTTTTCAATTTCTCTTGCATGGAAAGGTTCTGGTCTAGATGCACAGGATAGTGTACCTGATAATCAGCTGAATTCACTTGTTTTTCCCAAGGGTAATCCTATACCAAGTATCAAGGCACCGACATTCTACAGGTCAGGAACATTTTCCATTGATGTACAATACAGTGATGTGAGTGGGCAACAAACCCTTGCAAAGATCAGCACATATACGATCGGTCCTTTTGATGTTAAGCAAAGCGAAAAGGCAAAAGTTAAAGTGAAAGTTCGTTTGAATGTGCATGGAATTGTTTCTGTTGACCTGGCAACTCTCCTCGAAGAGGAAGAAGTTGAGGCTTCAGTTTCCAGAGAATGGATGTTGATTTACAATGGATGTTTTCCCATTTTGTGTTTGAATGGCATTTTTTGA	1380	0.4225	MMNPKNSVSQIKRLIGKKFSDESLPFSVSEGPDGCPLIHARYLGEVKTFTPTQVFAMMLSNMKEIATKNLNDAVHDCCIAIPVYFTDLQRRAVLHPLRLLHETTATALAYGIYKTDLSETDPLNVAFVDIGHATMQVCIAGFKKGQLKVVAHLFDRSLGGRDFDEVLFHHFAGKFKEEYKIDVLQNARACLRLRAACEKMKKMLSANFVVLLNIECLMDEKDVKGIMKRDEFEEPSLPILERVKGPLEKALADAGLSVDDIHIVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVAKGAALQCAILSPTFKVREFQVNESFPFSISLAWKGSGLDAQDSVPDNQLNSLVFPKGNPIPSIKAPTFYRSGTFSIDVQYSDVSGQQTLAKISTYTIGPFDVKQSEKAKVKVKVRLNVHGIVSVDLATLLEEEEVEASVSREWMLIYNGCFPILCLNGIF	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g00808	459	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	313	435	IPR029047	-
	Trre13g00808	459	FunFam	Heat shock 70 kDa protein 4	159	242	-	-
	Trre13g00808	459	Gene3D	Actin; Chain A, domain 4	159	242	-	-
	Trre13g00808	459	FunFam	Heat shock protein ssb1	9	57	-	-
	Trre13g00808	459	SUPERFAMILY	Actin-like ATPase domain	124	309	IPR043129	-
	Trre13g00808	459	Gene3D	-	115	289	-	-
	Trre13g00808	459	PANTHER	HSC70CB, ISOFORM G-RELATED	1	434	-	-
	Trre13g00808	459	Gene3D	-	2	50	-	-
	Trre13g00808	459	SUPERFAMILY	Actin-like ATPase domain	2	114	IPR043129	-
	Trre13g00808	459	Gene3D	-	51	303	-	-
	Trre13g00808	459	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	316	442	IPR029047	-
	Trre13g00808	459	Pfam	Hsp70 protein	2	439	IPR013126	GO:0005524\|GO:0140662
	Trre13g00808	459	PRINTS	70kDa heat shock protein signature	77	97	-	-
	Trre13g00808	459	PRINTS	70kDa heat shock protein signature	292	312	-	-
	Trre13g00808	459	PRINTS	70kDa heat shock protein signature	406	422	-	-
	Trre13g00808	459	PRINTS	70kDa heat shock protein signature	261	277	-	-
	Trre13g00808	459	FunFam	Heat shock 70 kDa protein 4	10	133	-	-
	Trre13g00808	459	CDD	HSPA4_like_NDB	2	310	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g00808	Trre-Chr13	6265052	6266918	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g00808	2	367	Calmodulin-binding Proteins	AT1G16030	34.896	8.61e-67	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g00808	K09489		-	gmx:100780156	694.886