Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00795 ATGGTTCCTAAACTTGCAGGTCTTCTAAGATGTGGTAAGAGTTGTAGATTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGCGATTTTACTGAAATCGAAGAGGATCAAATTATACAACTACATGCTCGTCTTGGTAACAGGTGGTCAAAGATTGCTTCGCATTTTCCAGGGAGAACGGACAATGAAATTAAAAATCATTGGAACACAAGAATCAAGAAGAAGCTAAAGTTCCTTGGTTTGGATCCTGTGCACCATAAGCCAATTGAGCAAAAGCAACAAACTGATGAAGATGAAAAAGACAAAACTAACCAACAACTAAATATTCCACAAGGGGTTGAAGAAAATGTGGAAAATATTAAATCCATGGACAATGATGTCACAAAAGAAATGACAAAAACAGAATGGAAAAAAGAAGAAAACAAAGTGACTTGGGATGATAGTGATGAACTTTTAAACAATTTTGAAATTCTATGTTCAAATTTGGATTTAGGGACATGGATGAACCAAGGCACAAATACTAGTACAAATTCTGTTTCTAGTTCCACTATCTCTTTGGATAATACTAGCCACATTTCTATTGATGAGTCCTCTTACCTTCAACAAAATTCCTTACAACAATGGGTTGATAGTATGGATTCCATGCTCCCATGGGATGGCTTCAATCCTCTTGATCAAGAATTTTCTTTTTTTGGAAAATAG 708 0.3545 MVPKLAGLLRCGKSCRLRWINYLRPDLKRGDFTEIEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTRIKKKLKFLGLDPVHHKPIEQKQQTDEDEKDKTNQQLNIPQGVEENVENIKSMDNDVTKEMTKTEWKKEENKVTWDDSDELLNNFEILCSNLDLGTWMNQGTNTSTNSVSSSTISLDNTSHISIDESSYLQQNSLQQWVDSMDSMLPWDGFNPLDQEFSFFGK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00795 235 MobiDBLite consensus disorder prediction 87 108 - -
Trre13g00795 235 CDD SANT 32 72 IPR001005 -
Trre13g00795 235 PANTHER MYB DOMAIN PROTEIN 55 2 199 - -
Trre13g00795 235 SMART sant 28 76 IPR001005 -
Trre13g00795 235 FunFam MYB transcription factor 30 91 - -
Trre13g00795 235 MobiDBLite consensus disorder prediction 87 106 - -
Trre13g00795 235 SUPERFAMILY Homeodomain-like 10 82 IPR009057 -
Trre13g00795 235 Gene3D - 30 111 - -
Trre13g00795 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Trre13g00795 235 Gene3D - 2 28 - -
Trre13g00795 235 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Trre13g00795 235 Pfam Myb-like DNA-binding domain 29 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00795 Trre-Chr13 6094543 6095681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00795 2 129 MYB Transcription Factor Family AT1G66230 57.143 2.94e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre13g00795 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00795 K09422 - gmx:100783231 331.257