Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00788 ATGGAATTAGATCCCAGCTTTGAAGAAAAGATTTCTTATCTTTTTGGAGATTATCCTAAAAATTCTTCTATAAAATTAGATATCCCCACAAATGTTCCCTCTGAACTAAATCCTACCTTTTCACATTGCAACACATTTTTGTACCAAAATTATTGCAATCCATTTAAGGAACATCATCTGAAAGGGTCAAACCCTCACTCTTGTTTTTCTACGGTGATTACTTCCTCCATAGACCCAATCACTATGATCCCAACCCCTTCATATAAGGCTATGCACAACAATGGGTCACAAAGAGAATCTACCAGCAGTGCTCAAAATCCAATTATGTTTGCACCAAACAATAACAAAATGAAAGTTATGTATGGTCGCCTAAATACTAGCAAAGGAGTTTGGGATGTATCCAAGAAAAATGTCTTTCAATATGGTGAAACTTTACAACCTCAAGCGGATCCCTCTTTACCACCATCAGAATTTTATGATGCACATCCATCTCTATTAGTTAAGTCTGGACATCAAGGAGATCTTTCATCTGAGGGTGGGATTGAAAAGAAGCGCCAAGAAAATGATGAAGGACTCGTTCTTAGTGATCAGAAGCGGAAAAAGAGGAGTCAAAAGAATAGTAAAATTCAACACAAGGATCCTAATACAATCAAAGGCCAATGGACTGCAGATGAGAATAGCAATCTTGTCGAATTGGTGGATATCTTAGGGTGTGATTGGGCTGAGATAGCTACGTTTATGAATGGTAGGAGCGGGAAACAATGCAGGGAGAGATGGTATAACCATCTAGGACCAAAAATTAAGAAATCGTCATGGAGTGAGGAGGAGGAAAAAGTACTGATTGAAGCTCATAAGAAAGTTGGAAACAAGTGGACTGCAATTGCAAGAATGTTACCCGGTCGCACTGATAATGCCATTAAGAACCACTGGAACACCGCTATACGAAGTCAAACTCGCGAGACCAAAACGAATCGGTTTAATAGTTTTAAAAAAACAATACTTCATAAATACATTGATGAAATTATTTCTACTAAGGAAGTTGAAAAAGAGGATGATGAAGATTTAGCTACTCGAGAGGATGAACAACCTGGTGGTTCCGAGGAAATGATGTTCGATAATGGTGATGATGGAATGACAAGTTGGGCTAGGACAACAGATTATGAGTTTGGAAATGGAATGGAGTTTTTCGTTGAGGTTACCTTGAAGGAGGAAATGGATTTCATGGAGAGTGTGTTTGGATCAATTAGTTGA 1251 0.3821 MELDPSFEEKISYLFGDYPKNSSIKLDIPTNVPSELNPTFSHCNTFLYQNYCNPFKEHHLKGSNPHSCFSTVITSSIDPITMIPTPSYKAMHNNGSQRESTSSAQNPIMFAPNNNKMKVMYGRLNTSKGVWDVSKKNVFQYGETLQPQADPSLPPSEFYDAHPSLLVKSGHQGDLSSEGGIEKKRQENDEGLVLSDQKRKKRSQKNSKIQHKDPNTIKGQWTADENSNLVELVDILGCDWAEIATFMNGRSGKQCRERWYNHLGPKIKKSSWSEEEEKVLIEAHKKVGNKWTAIARMLPGRTDNAIKNHWNTAIRSQTRETKTNRFNSFKKTILHKYIDEIISTKEVEKEDDEDLATREDEQPGGSEEMMFDNGDDGMTSWARTTDYEFGNGMEFFVEVTLKEEMDFMESVFGSIS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00788 416 MobiDBLite consensus disorder prediction 348 375 - -
Trre13g00788 416 SUPERFAMILY Homeodomain-like 242 319 IPR009057 -
Trre13g00788 416 MobiDBLite consensus disorder prediction 177 200 - -
Trre13g00788 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 263 IPR017930 -
Trre13g00788 416 MobiDBLite consensus disorder prediction 169 220 - -
Trre13g00788 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 318 IPR017930 -
Trre13g00788 416 CDD SANT 221 263 IPR001005 -
Trre13g00788 416 CDD SANT 271 312 IPR001005 -
Trre13g00788 416 SUPERFAMILY Homeodomain-like 206 255 IPR009057 -
Trre13g00788 416 FunFam Transcriptional activator Myb isoform A 217 269 - -
Trre13g00788 416 PANTHER MYB PROTEIN-RELATED 218 330 - -
Trre13g00788 416 Gene3D - 271 315 - -
Trre13g00788 416 SMART sant 268 316 IPR001005 -
Trre13g00788 416 SMART sant 217 265 IPR001005 -
Trre13g00788 416 Gene3D - 209 269 - -
Trre13g00788 416 ProSiteProfiles Myb-like domain profile. 264 314 IPR001005 -
Trre13g00788 416 Pfam Myb-like DNA-binding domain 218 263 IPR001005 -
Trre13g00788 416 Pfam Myb-like DNA-binding domain 269 312 IPR001005 -
Trre13g00788 416 ProSiteProfiles Myb-like domain profile. 213 263 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00788 Trre-Chr13 6048597 6052059 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00788 202 353 MYB Transcription Factor Family AT5G58850 45.455 1.20e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00788 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00788 K09422 - tpra:123892067 555.444