Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00784 ATGGAATTAGATCCTAGCTTTCAAGAAAATATTCCTTATCTTTTTGGAGATTATCCTAAAAATTCTTCCTTAGAATTAGACATCCCCACAATATTTTCCTCCCAACAAAATTCTACCTTTTCATTTCCACTTTCACATTGCACCACATTTTTGTACCAAAGTTATTGCAATCCATTTAAAGAACATCATCTGAAAGGGTCAAACCATCACTCTAGTTTTTCTACGGTGATTCCTTCCTCCATAGGCTTAATCACTATGATCCCAACCCCTTCATACAAGGCTGCACACAACAATGGGTCCCAAAGAGAATCTATGAGTGCTCAAAATCCAATGATGTATGCACCAAACAATAACAAAATGGAACCTGTGCATGGCCGCCTAAATACTAGCAAAGGAGTTTGGGATCTGTCCCAAAAAAATCTCTTTAAGTATGGTGAAACTTCACAACCTCAGGTGGATCTCTCTTTACCACTATCTCCAGTTTATGATGCACAACCATCTATGTCAGTTAAGCCTGAACATCAAGGAGATCTTTCATTTGATGGTGAATTGAAAACAAACGCCAAAAAAATGATCAAGGACTCGATCTTAGTGACCAGAAGCGACATAAGAGGAGTCAAAGGAATCGTAAAAATCAACGCAAGGATCCCTATACCATCAAAGGCCGATGGAAGGCGACTGAGAATAGCAATCTTGTCGAATTGGTGGATATCTTTGGCCCGGGCAGATGCCCAGGCAAGCCGTGCGGTAAACTCGCCACTGTGCAGGGAGAGATGGAATAACCATCTTCGATCAAAAATTAAGAAATCGCCATGGAGCGAAGAGGAGGAAAAAGTACTGATTGAAGCTCATAAGAGAGTTGGAAACAAGTGGACTCAAATTGCAAGAAAGTTACCCGGCCGCACTGAGAATGCCATTAAGAACCACTGGAACACCGCTATACGTTGCCAAAACCGCCAGAACAGAACGAACCGGTGGAATAGTTCGAAAAAAACAATACTTCAAAAATACATTAATGAAGTCAATTCAACTAAGGAAGTTGAGGAAGAGCATGCTGAAGATTTGGCTACCCAAAAGGATGAACAACTTGGTGGTTATGAAGAAATGATGTTCAATAATGGTGATGATAGAATGGCAAGTGGGTTTGGGACTATGGATTTTGAGTTTGAAAATGGAATGGAGTTTTTTGTTGAGGTTACCATCAAGGAGGAAATGGATTTCATGGAGATGATCAATAATAACCCTTAA 1248 0.4014 MELDPSFQENIPYLFGDYPKNSSLELDIPTIFSSQQNSTFSFPLSHCTTFLYQSYCNPFKEHHLKGSNHHSSFSTVIPSSIGLITMIPTPSYKAAHNNGSQRESMSAQNPMMYAPNNNKMEPVHGRLNTSKGVWDLSQKNLFKYGETSQPQVDLSLPLSPVYDAQPSMSVKPEHQGDLSFDGELKTNAKKMIKDSILVTRSDIRGVKGIVKINARIPIPSKADGRRLRIAILSNWWISLARADAQASRAVNSPLCRERWNNHLRSKIKKSPWSEEEEKVLIEAHKRVGNKWTQIARKLPGRTENAIKNHWNTAIRCQNRQNRTNRWNSSKKTILQKYINEVNSTKEVEEEHAEDLATQKDEQLGGYEEMMFNNGDDRMASGFGTMDFEFENGMEFFVEVTIKEEMDFMEMINNNP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00784 415 SMART sant 268 316 IPR001005 -
Trre13g00784 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 318 IPR017930 -
Trre13g00784 415 ProSiteProfiles Myb-like domain profile. 264 314 IPR001005 -
Trre13g00784 415 SUPERFAMILY Homeodomain-like 254 322 IPR009057 -
Trre13g00784 415 Pfam Myb-like DNA-binding domain 269 312 IPR001005 -
Trre13g00784 415 PANTHER MYB PROTEIN-RELATED 254 335 - -
Trre13g00784 415 Gene3D - 270 315 - -
Trre13g00784 415 CDD SANT 271 312 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00784 Trre-Chr13 6016409 6020503 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00784 222 342 MYB Transcription Factor Family AT4G18770 46.281 5.65e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre13g00784 Myb_DNA-binding 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00784 K09422 - tpra:123892067 483.411